hammerlab / cycledash
Variant Caller Analysis Dashboard and Data Management System
☆36Updated 9 years ago
Alternatives and similar repositories for cycledash:
Users that are interested in cycledash are comparing it to the libraries listed below
- Javascript library for visualizing genomics data with D3.☆19Updated 8 years ago
- A VCF parser and variant record model in JavaScript.☆22Updated 7 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- ☆37Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 7 years ago
- SVG based genome viewer written in javascript using D3☆33Updated 9 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- HGVS variant description extractor☆11Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- ☆12Updated 8 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- Isaac Genome Alignment Software☆37Updated 9 years ago
- Population Reference Graphs for the HLA and MHC.☆34Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- a string to graph aligner☆41Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- WDL plugin for pytest☆48Updated last year
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- Django backend to varapp☆20Updated 8 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago