Alternatives and similar repositories for cycledash

Users that are interested in cycledash are comparing it to the libraries listed below

• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• brinkmanlab / GenomeD3Plot
  SVG based genome viewer written in javascript using D3
  ☆68Updated 7 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 5 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• raphael-group / gd3
  Javascript library for visualizing genomics data with D3.
  ☆19Updated 8 years ago
• hammerlab / vcf.js
  A VCF parser and variant record model in JavaScript.
  ☆22Updated 8 years ago
• varapp / varapp-backend-py
  Django backend to varapp
  ☆20Updated 8 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated last month
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 3 weeks ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• blachlylab / mucor
  ☆12Updated 8 years ago
• PapenfussLab / socrates
  ☆16Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 5 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆68Updated 5 years ago
• lairdm / islandplot
  SVG based genome viewer written in javascript using D3
  ☆33Updated 10 years ago
• cggh / panoptes
  Eyes on your (genomic) data
  ☆37Updated 3 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 3 years ago