Alternatives and similar repositories for CSHstats

Users that are interested in CSHstats are comparing it to the libraries listed below

• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆25Updated this week
• lmweber / Rtsne-example
  Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
  ☆17Updated 10 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 5 months ago
• atgu / aou_gwas
  ☆14Updated 3 months ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 6 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 6 years ago
• 7ravis / hgvs-regexp
  WIP : regular expressions for identifying and extracting values from HGVS nomenclature
  ☆14Updated 7 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆15Updated last year
• NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3
  ☆28Updated 7 years ago
• AndersenLab / IBiS-Bootcamp
  ☆40Updated 9 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• pschorderet / NEAT
  NExt generation Analysis Toolbox
  ☆14Updated 10 years ago
• NCBI-Hackathons / Network_SNPs
  A framework for network analysis and display of SNPs
  ☆19Updated 9 years ago
• trvrb / phylodynamics-lecture
  Lecture on viral phylodynamics
  ☆11Updated 4 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated 2 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• Novartis / EQP-cluster
  Unix-based RNA-seq quantification pipeline
  ☆10Updated 10 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 8 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 6 months ago
• UCLouvain-CBIO / WSBIM1322
  Bioinformatics course (WSBIM1322)
  ☆17Updated 2 weeks ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated last month
• miniwdl-ext / miniwdl-aws
  Extends miniwdl to run workflows on AWS Batch & EFS
  ☆22Updated last year
• vals / python-gprofiler
  ☆13Updated 6 years ago