DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
☆60Apr 16, 2019Updated 6 years ago
Alternatives and similar repositories for pVAC-Seq
Users that are interested in pVAC-Seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆214Mar 3, 2026Updated last month
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- ☆20Feb 24, 2017Updated 9 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆174Updated this week
- ☆30Oct 6, 2021Updated 4 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- An R package for inferring the subclonal architecture of tumors☆122Mar 15, 2026Updated 3 weeks ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated 2 months ago
- ☆11Jul 13, 2018Updated 7 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Updated this week
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Nov 28, 2023Updated 2 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated this week
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆104Feb 13, 2023Updated 3 years ago
- ☆69Jun 21, 2022Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 6 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆417Mar 13, 2026Updated last month
- Strelka2 germline and somatic small variant caller☆393Dec 29, 2021Updated 4 years ago
- Genome data visualizations☆222Jan 10, 2026Updated 3 months ago
- ☆51Jun 27, 2019Updated 6 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆204Jan 5, 2026Updated 3 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆114Oct 13, 2023Updated 2 years ago