wukevin / babelLinks
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
☆46Updated 2 years ago
Alternatives and similar repositories for babel
Users that are interested in babel are comparing it to the libraries listed below
Sorting:
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆81Updated 3 weeks ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Updated 4 months ago
- ☆47Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- ☆124Updated last week
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Updated last year
- ☆90Updated last year
- ☆101Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆117Updated 2 years ago
- Multi-omic velocity inference☆116Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated 2 weeks ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- ☆52Updated 3 weeks ago
- ACTIONet single-cell analysis framework☆44Updated last year
- ☆48Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 8 months ago
- ☆48Updated 6 years ago
- ☆62Updated 2 years ago
- ☆69Updated 2 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆85Updated last week