Alternatives and similar repositories for babel:

Users that are interested in babel are comparing it to the libraries listed below

• zcang / SpaOTsc
  ☆45Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 9 months ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆101Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆74Updated last month
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆56Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆41Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆108Updated last year
• SydneyBioX / scJoint
  ☆57Updated last year
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆26Updated 5 years ago
• YosefLab / velovi
  ☆39Updated this week
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆59Updated 2 weeks ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆53Updated this week
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated last week
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆75Updated last year
• bowang-lab / DeepVelo
  ☆46Updated 11 months ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆30Updated last month
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated last year
• bm2-lab / scMVP
  ☆28Updated 4 months ago
• zhoujt1994 / scHiCluster
  ☆62Updated last week
• theislab / scgen-reproducibility
  ☆24Updated 4 years ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆60Updated 3 years ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆90Updated 6 months ago
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆28Updated 4 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated this week
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆39Updated 3 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆78Updated 3 months ago