Alternatives and similar repositories for babel

Users that are interested in babel are comparing it to the libraries listed below

• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆80Updated this week
• zcang / SpaOTsc
  ☆47Updated 5 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 6 months ago
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆100Updated 4 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆103Updated 2 years ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆32Updated 2 years ago
• Durenlab / LINGER
  ☆122Updated 7 months ago
• SydneyBioX / scJoint
  ☆62Updated 2 years ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆48Updated 4 years ago
• mlbio-epfl / systema
  ☆48Updated 6 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆81Updated this week
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆116Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• nitzanlab / biolord
  ☆89Updated last year
• bm2-lab / scMVP
  ☆34Updated 9 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆112Updated 3 months ago
• theislab / scgen-reproducibility
  ☆33Updated 5 years ago
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆94Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆171Updated 3 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 10 months ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆106Updated 2 years ago