scalableminds / webknossos
Visualize, share and annotate your large 3D images online
☆129Updated this week
Related projects ⓘ
Alternatives and complementary repositories for webknossos
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆74Updated 3 weeks ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆31Updated 7 months ago
- Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.☆23Updated this week
- Scalable Optical Flow-based Image Montaging and Alignment☆54Updated this week
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Updated 5 months ago
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆156Updated 2 weeks ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- ImgLib2-based viewer for registered SPIM stacks and more☆35Updated 2 weeks ago
- A distributed application framework for large-scale data management and AI model serving☆13Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆44Updated last week
- ☆33Updated this week
- Discover, install, and share napari plugins☆51Updated 2 months ago
- The ImageJ plugin to run deep-learning models☆86Updated this week
- Fiji plugins for starting BigDataViewer and exporting data.☆21Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆57Updated this week
- Read and write Neuroglancer datasets programmatically.☆134Updated this week
- Render transformed image tiles☆34Updated this week
- A fully scalable robust image feature extraction library.☆19Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆28Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆48Updated last week
- native Python dataclasses for the OME data model☆53Updated this week
- Collaborative Annotation Toolkit for Massive Amounts of Image Data☆188Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 3 months ago
- Block-wise task scheduling for large nD volumes.☆27Updated 3 weeks ago
- Cookiecutter for napari plugins☆69Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆68Updated 2 weeks ago
- Python project containing Ice remoting code for OMERO☆22Updated 2 months ago
- A napari plugin for making animations☆79Updated 2 months ago