AllenInstitute / asap-modules
Shared repo for EM connectomics and Array Tomography render based image processing modules
☆15Updated last month
Alternatives and similar repositories for asap-modules
Users that are interested in asap-modules are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆81Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- ☆10Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- ☆40Updated 2 weeks ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆15Updated this week
- ☆45Updated 4 years ago
- 3D/4D volumetric rendering of microscopy data☆23Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆28Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- MorphoFeatures code and data☆21Updated 2 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- The ImageJ framework for quantification of neuronal anatomy☆48Updated last week
- ☆33Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- ☆12Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago