Shared repo for EM connectomics and Array Tomography render based image processing modules
☆17Mar 2, 2026Updated 5 months ago
Alternatives and similar repositories for asap-modules
Users that are interested in asap-modules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆16Apr 13, 2019Updated 7 years ago
- Render transformed image tiles☆37Updated this week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆28Feb 24, 2026Updated 6 months ago
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆45Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Mar 18, 2024Updated 2 years ago
- Optimization of single-cell biophysically detailed models☆16Jul 17, 2020Updated 6 years ago
- Cuda/C++ library for Regularized 2D and 3D Tomography Reconstructions.☆24Aug 28, 2025Updated last year
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Aug 17, 2026Updated last week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Updated this week
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆21May 16, 2026Updated 3 months ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Read and write Neuroglancer datasets programmatically.☆175Aug 13, 2026Updated 2 weeks ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆23Jul 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- WebGL-based viewer for volumetric data☆25Updated this week
- Umbrella package to help install/load nat packages☆11Mar 9, 2026Updated 5 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 3 months ago
- This repository contains smart contracts for Intial Token Sale (Crowdsale of BCDC Tokens)☆13Nov 30, 2017Updated 8 years ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Aug 9, 2026Updated 3 weeks ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 2 months ago
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- ☆11Aug 12, 2026Updated 2 weeks ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- ☆17Jul 6, 2023Updated 3 years ago
- Uncertainty-Aware Label Rectification for Domain Adaptive Mitochondria Segmentation in MICCAI 2021☆13Jun 22, 2021Updated 5 years ago
- CODEX data processing code☆13Jul 1, 2025Updated last year
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆18Jun 20, 2023Updated 3 years ago
- ☆11Dec 26, 2017Updated 8 years ago
- ☆43Sep 1, 2025Updated 11 months ago
- Azure CognitiverSearch and Bing with ChatGPT to provide internal/external information chatbot☆18Jul 31, 2023Updated 3 years ago
- Masked Autoencoder Guided Segmentation at Pixel Resolution☆17Oct 3, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- STED simulation platform written in Python☆18Oct 4, 2024Updated last year
- Task-driven models of the dorsal visual stream☆20Jun 15, 2026Updated 2 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 3 months ago
- This repository contains the entire pipline (including data preprocessing, training, testing, evaluation and visualization) for the Shear…☆11Dec 3, 2019Updated 6 years ago
- Figures, tables and stats for Schneider, Lee and Mathis 2022: Learnable latent embeddings for joint behavioral and neural analysis.☆21Oct 6, 2023Updated 2 years ago
- ☆13Jun 17, 2026Updated 2 months ago
- Deep convolutional neural networks to restore single-shot electron microscopy images☆51Apr 15, 2026Updated 4 months ago