funkelab / synisterLinks
Neurotransmitter prediction from EM.
☆14Updated 6 months ago
Alternatives and similar repositories for synister
Users that are interested in synister are comparing it to the libraries listed below
Sorting:
- Python client utilties for interacting with the neuPrint connectome analysis service☆35Updated last week
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆37Updated last year
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆19Updated 3 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆103Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated 3 weeks ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆31Updated last month
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆66Updated 7 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆12Updated 2 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated this week
- A Python interface to access neuroanatomical atlases☆156Updated last week
- 🌈☆60Updated 5 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated this week
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆17Updated 8 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated 2 weeks ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆18Updated this week
- ☆12Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆51Updated last year
- a visualization method for neural data☆235Updated 4 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆52Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last month
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- Automated 3D cell detection in very large images☆217Updated 3 weeks ago
- ☆45Updated 5 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- Read and write Neuroglancer datasets programmatically.☆156Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- ☆18Updated 3 years ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Tools for distributed alignment of massive images☆86Updated this week