sandialabs / RUBRICLinks
☆12Updated 6 years ago
Alternatives and similar repositories for RUBRIC
Users that are interested in RUBRIC are comparing it to the libraries listed below
Sorting:
- Mumemto: multi-MUM and MEM finding across pangenomes☆115Updated last week
- ☆66Updated this week
- Call select base modifications in PacBio HiFi reads☆15Updated 9 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆105Updated 9 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆85Updated last week
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- TGS scaffolding☆47Updated 3 years ago
- ☆117Updated 3 weeks ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 5 months ago
- High-quality Nanopore-only genome polisher☆69Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆45Updated last week
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆73Updated 3 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆71Updated last month
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- ☆30Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆46Updated 3 months ago
- ☆33Updated 4 years ago
- ☆66Updated last year
- ☆79Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆53Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- ☆38Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago