☆12Dec 26, 2018Updated 7 years ago
Alternatives and similar repositories for RUBRIC
Users that are interested in RUBRIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 15, 2017Updated 8 years ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- ☆11Mar 4, 2023Updated 3 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- ☆12Apr 8, 2021Updated 4 years ago
- A SiLA 2 compliant controller for an Opentrons OT-2 liquid handling robot.☆12Jun 4, 2023Updated 2 years ago
- Supplementary Files☆10Mar 16, 2019Updated 7 years ago
- Python bindings to bwa mem☆32Mar 26, 2020Updated 5 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Oct 21, 2024Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆30Dec 5, 2019Updated 6 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated 11 months ago
- Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtoo…☆17Aug 24, 2016Updated 9 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 5 years ago
- ☆19Jun 23, 2020Updated 5 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated last year
- A terminal-based renderer for OpenGL shaders. Like Shadertoy, but in the terminal.☆12Sep 24, 2023Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆15Apr 6, 2016Updated 9 years ago
- ☆12Jan 27, 2023Updated 3 years ago
- A utility that calculates the Shannon entropy of a given input file☆14Mar 15, 2022Updated 4 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- ☆16Oct 2, 2019Updated 6 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- Nanopore sequence read simulator☆294Mar 12, 2026Updated last week