TianyiShi2001 / bioinformatics-algorithms-rsLinks
Bioinformatics Algorithms implemented in Rust for Learners
☆31Updated 4 years ago
Alternatives and similar repositories for bioinformatics-algorithms-rs
Users that are interested in bioinformatics-algorithms-rs are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- bioinformatics toolkit in rust☆93Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Alignment-based gene expression quantification☆30Updated 4 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- gia: Genomic Interval Arithmetic☆65Updated last year
- De Bruijn graphs in Rust☆72Updated last year
- ntHash implementation in Rust☆36Updated last year
- sfasta☆35Updated 7 months ago
- Compacted and colored de Bruijn graph construction and querying☆91Updated 3 weeks ago
- The D4 Quantitative Data Format☆169Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- ☆12Updated 3 years ago
- ☆57Updated 3 years ago
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- Substring index for paths in a graph☆60Updated 3 weeks ago
- A quality control tool for FASTQ files written in rust☆52Updated 6 months ago
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- ☆49Updated 2 years ago
- GFA parser in Rust☆30Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Updated last week
- Rust library for processing sequencing reads.☆25Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 10 months ago
- ☆50Updated 3 years ago