Alternatives and similar repositories for bioinformatics-algorithms-rs

Users that are interested in bioinformatics-algorithms-rs are comparing it to the libraries listed below

• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆81Updated 2 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆81Updated 10 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆72Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆35Updated 4 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 6 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 8 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated last month
• HudsonAlpha / fmlrc2
  ☆49Updated 2 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆100Updated this week
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 6 years ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆44Updated 4 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆138Updated 11 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated last month
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• DMU-lilab / pTrimmer
  Used to trim off the primer sequence from mutiplex amplicon sequencing
  ☆24Updated 3 weeks ago