TianyiShi2001 / bioinformatics-algorithms-rs

Related projects ⓘ

Alternatives and complementary repositories for bioinformatics-algorithms-rs

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆25Updated 5 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆76Updated 8 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆50Updated 6 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆70Updated 11 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 5 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆51Updated 2 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆65Updated 2 months ago
• aseyboldt / fastq-rs
  ☆47Updated 2 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆41Updated this week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 3 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 3 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆29Updated 5 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 4 years ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆41Updated 5 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆44Updated 2 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆72Updated this week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 8 months ago
• jguhlin / sfasta
  sfasta
  ☆33Updated 3 months ago
• EGA-archive / ont2cram
  Oxford Nanopore HDF/Fast5 to CRAM conversion tool
  ☆22Updated 4 years ago
• wdecoster / kyber
  ☆17Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 4 months ago
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆29Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆28Updated last week
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆8Updated this week