Alternatives and similar repositories for bioinformatics-algorithms-rs

Users that are interested in bioinformatics-algorithms-rs are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 3 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆89Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 2 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated last month
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆69Updated 11 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 7 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆41Updated 2 weeks ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• HudsonAlpha / fmlrc2
  ☆48Updated 2 years ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆39Updated this week
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated last year
• wdecoster / kyber
  ☆21Updated 5 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 5 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆92Updated 3 weeks ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆34Updated last month
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆33Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 6 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 weeks ago