TianyiShi2001 / bioinformatics-algorithms-rs
Bioinformatics Algorithms implemented in Rust for Learners
☆30Updated 3 years ago
Alternatives and similar repositories for bioinformatics-algorithms-rs:
Users that are interested in bioinformatics-algorithms-rs are comparing it to the libraries listed below
- bioinformatics toolkit in rust☆86Updated 8 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 7 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Fasten toolkit, for streaming operations on fastq files☆77Updated last week
- Single-Cell RNA-seq pseudo-aligner☆51Updated 8 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 2 weeks ago
- gia: Genomic Interval Arithmetic☆58Updated 5 months ago
- FASTA and FASTQ parsing in Rust☆74Updated this week
- Alignment-based gene expression quantification☆27Updated 8 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- ☆11Updated 2 years ago
- Rust implmentation of VCF parser☆22Updated 2 years ago
- De Bruijn graphs in Rust☆65Updated 6 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 2 months ago
- Bidirectional WFA (Paper)☆44Updated 8 months ago
- Toolkit for manipulating FASTA and SAM files☆17Updated 10 months ago
- Bit packed and well-typed biological sequences☆26Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated last month
- long read RNA-seq quantification☆73Updated last week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- sfasta☆35Updated last month
- A quality control tool for FASTQ files written in rust☆42Updated 5 months ago
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- Efficient querying of biological databases☆33Updated this week
- Creating alignment plots from bam files☆56Updated this week
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 3 weeks ago
- Rust utility code☆32Updated 11 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month