salzman-lab / SpliZ

Related projects ⓘ

Alternatives and complementary repositories for SpliZ

• hyulab / PINTS
  ☆13Updated last month
• salzman-lab / SICILIAN
  ☆19Updated 5 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆29Updated 2 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆45Updated 8 months ago
• UPSUTER / GEMLI
  ☆27Updated 3 months ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• Danko-Lab / proseq2.0
  Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
  ☆24Updated 2 months ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆28Updated 3 years ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 3 years ago
• Xinglab / SEASTAR
  SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
  ☆13Updated 6 years ago
• satijalab / PASTA
  ☆15Updated 2 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆34Updated 7 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆43Updated 8 months ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 4 months ago
• TobiTekath / DTUrtle
  Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
  ☆17Updated 7 months ago
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆29Updated last year
• Zhang-lab / BeCorrect
  ☆14Updated 3 years ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆18Updated 4 months ago
• BMILAB / scAPAtrap
  ☆15Updated last year
• aryarm / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆22Updated 2 years ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆24Updated 6 months ago
• PoolLab / generecovery
  ☆29Updated last year
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆26Updated 3 years ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago