Nextflow implementation of SpliZ
☆15Aug 21, 2023Updated 2 years ago
Alternatives and similar repositories for SpliZ
Users that are interested in SpliZ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- ☆55Aug 1, 2024Updated last year
- ☆292Mar 4, 2026Updated 2 weeks ago
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- A single cell sequencing read simulator.☆34Oct 14, 2024Updated last year
- Toolkit for single-cell DNA methylation analysis.☆46Mar 16, 2026Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 5 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆15Jul 16, 2020Updated 5 years ago
- Transfer Learning-enabled context-aware microbial source tracking☆15Oct 4, 2022Updated 3 years ago
- ORF prediction using python☆12Aug 24, 2021Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Nov 24, 2023Updated 2 years ago
- ☆18May 31, 2024Updated last year
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Feb 16, 2026Updated last month
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13Nov 13, 2025Updated 4 months ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆27Nov 2, 2024Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated 10 months ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 3 months ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- ☆13Sep 4, 2025Updated 6 months ago
- mouse_fullStack_annotations☆13Jun 29, 2023Updated 2 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 8 months ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 9 months ago
- ☆12Dec 14, 2021Updated 4 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆20Jan 13, 2021Updated 5 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 5 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆181Mar 27, 2025Updated 11 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Mar 17, 2026Updated last week