krassowski / multi-omics-state-of-the-field
Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
☆26Updated last year
Alternatives and similar repositories for multi-omics-state-of-the-field:
Users that are interested in multi-omics-state-of-the-field are comparing it to the libraries listed below
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 9 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆35Updated this week
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated last month
- ☆19Updated 2 years ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆11Updated 4 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆34Updated 3 months ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago
- Python package and command line tool for epitope prediction☆51Updated 9 months ago
- Connect the dots in networks.☆18Updated 4 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated 2 weeks ago
- Open source short linear motif discovery and sequence analysis☆24Updated 7 months ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 2 months ago
- LLM-based gene function enrichment tool☆11Updated 2 months ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated this week
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 10 months ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- ☆38Updated last year
- ☆19Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago