Alternatives and similar repositories for RPath

Users that are interested in RPath are comparing it to the libraries listed below

• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆29Updated 2 years ago
• Case-esaC / iDrug
  ☆20Updated 5 years ago
• snap-stanford / planet
  PlaNet: Predicting population response to drugs via clinical knowledge graph
  ☆31Updated 8 months ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 3 years ago
• tal-baum / drugbank_xml2csv_python
  Python script for processing DrugBank XML to MySQL-ready CSV files
  ☆19Updated 8 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆36Updated last year
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• sonial / KniMet
  metabolomics/lipidomics data processing
  ☆10Updated 4 years ago
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆26Updated 2 months ago
• gpp-rnd / stringdb
  ☆11Updated last year
• biothings / mychem.info
  MyChem.info: A BioThings API for chemical/drug annotations
  ☆18Updated 2 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• aberHRML / metabolighteR
  R Interface to the Metabolights REST API
  ☆11Updated 3 months ago
• Fraunhofer-ITMP / kgg
  An automated workflow to create disease-specific Knowledge Graphs
  ☆18Updated 3 months ago
• hhabra / metabCombiner
  metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation
  ☆13Updated last year
• kgayvert / PrOCTOR
  A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials
  ☆21Updated 6 years ago
• rformassspectrometry / MetaboAnnotation
  High level functionality to support and simplify metabolomics data annotation.
  ☆18Updated last month
• dmis-lab / moable
  Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding
  ☆14Updated 2 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆20Updated 5 years ago
• aalto-ics-kepaco / comboFM
  Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines o…
  ☆26Updated 5 years ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆10Updated 4 years ago
• ChengF-Lab / 2019-nCoV
  Network-based Drug Repurposing for Human Coronavirus
  ☆41Updated 5 years ago
• saramasarone / enrich_omics
  A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
  ☆20Updated last year
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 3 years ago
• ceiron61 / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆18Updated 7 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 8 months ago