enveda / RPath
Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"
☆15Updated 8 months ago
Alternatives and similar repositories for RPath:
Users that are interested in RPath are comparing it to the libraries listed below
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated 2 years ago
- ☆19Updated 4 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 4 months ago
- DNN-DTIs: improved drug-target interactions prediction using XGBoost feature selection and deep neural network☆11Updated 4 years ago
- ☆16Updated 3 years ago
- Python script for processing DrugBank XML to MySQL-ready CSV files☆16Updated 8 years ago
- ☆10Updated 4 years ago
- Drug-target interaction prediction using deepWalk node embedding algorithm on drugBank☆11Updated 4 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆26Updated 8 months ago
- ☆20Updated 4 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆21Updated 2 weeks ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆26Updated 3 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- a deep learning framework for essential protein prediction☆13Updated last year
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆17Updated 3 years ago
- drugbank相关数据的处理,包括获取药物sdf结构文件,drug相关信息,drug作用相关蛋白 信息,drugbank中drug id与其他数据库的映射,protein蛋白相关信息到其他数据库的映射☆18Updated 3 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 4 months ago
- Protein Graph in Python for MetaPath-ML and more.☆18Updated 2 years ago
- Communicative Subgraph Representation Learning for Multi-Relational Inductive Drug-Gene Interaction Prediction☆11Updated 2 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆18Updated 5 years ago
- ☆13Updated 2 years ago
- ☆11Updated 5 years ago
- 🪝 What's the latest version for each database?☆27Updated this week
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆19Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆33Updated 6 months ago
- Code repository for "Prioritizing Repurposable Drugs for SARS-CoV-2 using Deep Learning and Population-based Validation"☆15Updated 2 years ago
- ☆55Updated 4 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago