sabifo4 / mammals_datingLinks
Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)
☆18Updated 10 months ago
Alternatives and similar repositories for mammals_dating
Users that are interested in mammals_dating are comparing it to the libraries listed below
Sorting:
- Genetic maps in autopolyploids☆29Updated 3 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- Software for ancestry estimation in unrelated individuals☆20Updated this week
- ☆30Updated this week
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆55Updated this week
- HyPhy standalone analyses☆46Updated last week
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆30Updated 10 months ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 5 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆19Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆55Updated 2 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆37Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Genome-wide de novo genotyping with 2bRAD☆23Updated 3 months ago
- ☆41Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R