sabifo4 / mammals_datingView external linksLinks
Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)
☆20Dec 15, 2025Updated 2 months ago
Alternatives and similar repositories for mammals_dating
Users that are interested in mammals_dating are comparing it to the libraries listed below
Sorting:
- MCMCtree tutorials☆28May 27, 2024Updated last year
- ☆16Jun 25, 2025Updated 7 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Newick tree processing☆13Updated this week
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- ☆12Mar 3, 2023Updated 2 years ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated 3 weeks ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Feb 6, 2026Updated last week
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 7 months ago
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 3 weeks ago
- Detection of outlier genes and species in phylogenomics☆17Dec 14, 2025Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- Feature-aware Directed OrtholoG search☆14Dec 17, 2025Updated last month
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Sep 2, 2020Updated 5 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆14Nov 21, 2024Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 5 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- ☆15Apr 22, 2024Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 2 years ago
- 一些用于画图的R脚本☆21Jan 8, 2026Updated last month
- ☆17Oct 21, 2024Updated last year
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- A suite of methods and models for studying evolutionary radiations☆24Feb 22, 2023Updated 2 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Mar 23, 2025Updated 10 months ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago