constantinpape / z5Links
Lightweight C++ and Python interface for datasets in zarr and N5 format
☆128Updated 3 weeks ago
Alternatives and similar repositories for z5
Users that are interested in z5 are comparing it to the libraries listed below
Sorting:
- Not HDF5☆195Updated last week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last month
- Set of compression filters for h5py☆78Updated last week
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆47Updated 3 years ago
- The RPC library used in ImJoy.☆25Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 3 weeks ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated 2 weeks ago
- GPU accelerated image/volume processing in Python☆113Updated 9 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Updated 6 years ago
- Pydantic models for OME-NGFF☆24Updated 4 months ago
- Distributed image processing☆225Updated last month
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Updated 4 years ago
- Zarr filesystem backend for N5☆17Updated last week
- Remote Frame Buffer for Jupyter☆82Updated 2 months ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆103Updated 4 months ago
- ☆42Updated last year
- ☆24Updated 4 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 weeks ago
- Library for producing and processing on the Adaptive Particle Representation (APR).☆51Updated last week
- scalable multiscale image pyramids in python☆29Updated last year
- A python script editor plugin for napari☆11Updated 2 years ago
- High quality visualization for volumetric image data☆55Updated this week
- A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.☆141Updated 3 weeks ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Updated 6 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated 2 months ago
- Discover, install, and share napari plugins☆54Updated last week