Lightweight C++ and Python interface for datasets in zarr and N5 format
☆135Jul 2, 2026Updated 3 months ago
Alternatives and similar repositories for z5
Users that are interested in z5 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Not HDF5☆212Aug 31, 2026Updated last month
- python tools for BigDataViewer☆23Jul 2, 2026Updated 3 months ago
- Zarr filesystem backend for N5☆24Sep 4, 2026Updated last month
- ITK IO for images stored in OME-Zarr format.☆10Sep 4, 2025Updated last year
- ☆19Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆175Updated this week
- ☆120Updated this week
- ☆22Oct 5, 2026Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Oct 5, 2026Updated last week
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 5 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 6 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 4 months ago
- Browse, share, and publish OME-Zarr data☆30Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Running compute-intense parts of BigStitcher distributed☆31Updated this week
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- A minimal Zarr image viewer based on Viv.☆200Jun 22, 2026Updated 3 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- ☆17Jul 4, 2022Updated 4 years ago
- ☆41Jul 24, 2024Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆47May 11, 2022Updated 4 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆262Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Yet Another Ome-ZARR Schema❗️☆23Updated this week
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Aug 22, 2024Updated 2 years ago
- ☆45Sep 28, 2026Updated 2 weeks ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 3 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 8 years ago
- wrapping z5 in R☆17Nov 25, 2020Updated 5 years ago
- Bio-Formats image file format to raw format converter☆113Sep 18, 2026Updated 3 weeks ago
- An implementation of chunked, compressed, N-dimensional arrays for Python.☆2,071Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆26Feb 14, 2026Updated 7 months ago