constantinpape / z5
Lightweight C++ and Python interface for datasets in zarr and N5 format
☆118Updated 4 months ago
Alternatives and similar repositories for z5:
Users that are interested in z5 are comparing it to the libraries listed below
- Not HDF5☆177Updated last month
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆59Updated last week
- Set of compression filters for h5py☆70Updated 6 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆53Updated 3 months ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆93Updated 3 weeks ago
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆42Updated 2 years ago
- Pydantic models for OME-NGFF☆23Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- Distributed image processing☆216Updated 2 weeks ago
- The RPC library used in ImJoy.☆24Updated 7 months ago
- A cookiecutter template for a modern C++ project with python bindings☆32Updated 2 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Updated 5 years ago
- A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.☆133Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- scalable multiscale image pyramids in python☆26Updated 7 months ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated last month
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- ☆40Updated 7 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆32Updated 2 weeks ago
- Remote Frame Buffer for Jupyter☆65Updated last month
- A python script editor plugin for napari☆11Updated last year
- Rust implementation of the N5 "Not HDF5" tensor file system format☆15Updated 2 years ago
- ☆19Updated 5 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- Zarr filesystem backend for N5☆15Updated last month
- serve Zarr datasets via HTTP☆28Updated last year
- Block-wise task scheduling for large nD volumes.☆29Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated this week