constantinpape / z5
Lightweight C++ and Python interface for datasets in zarr and N5 format
☆118Updated last month
Alternatives and similar repositories for z5:
Users that are interested in z5 are comparing it to the libraries listed below
- Not HDF5☆177Updated 3 weeks ago
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆45Updated 2 years ago
- Set of compression filters for h5py☆72Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆70Updated last week
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆93Updated 2 weeks ago
- Distributed image processing☆219Updated last week
- Pydantic models for OME-NGFF☆23Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 3 weeks ago
- ☆40Updated 9 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.☆137Updated last week
- Remote Frame Buffer for Jupyter☆74Updated 2 months ago
- Library for producing and processing on the Adaptive Particle Representation (APR).☆48Updated last month
- A multidimensional data container on top of Blosc2.☆44Updated 2 years ago
- GPU accelerated image/volume processing in Python☆111Updated 2 weeks ago
- Zarr filesystem backend for N5☆16Updated last month
- scalable multiscale image pyramids in python☆27Updated 9 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆54Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆132Updated last month
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 9 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- xtensor plugin to read and write images, audio files, numpy (compressed) npz and HDF5☆86Updated last year
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Updated 3 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- ☆20Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- A python script editor plugin for napari☆11Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆35Updated 2 weeks ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆31Updated last week
- Python based viewer for large mulit-dimensional datasets.☆20Updated 5 years ago