constantinpape / z5Links
Lightweight C++ and Python interface for datasets in zarr and N5 format
☆124Updated 4 months ago
Alternatives and similar repositories for z5
Users that are interested in z5 are comparing it to the libraries listed below
Sorting:
- Not HDF5☆187Updated last week
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆45Updated 3 years ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last week
- The RPC library used in ImJoy.☆25Updated last year
- Set of compression filters for h5py☆75Updated this week
- Zarr filesystem backend for N5☆16Updated 3 weeks ago
- GPU accelerated image/volume processing in Python☆111Updated 5 months ago
- A library to facilitate machine learning on multi-dimensional images.☆86Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆80Updated 2 weeks ago
- Distributed image processing☆222Updated 2 weeks ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆101Updated 3 months ago
- Pydantic models for OME-NGFF☆24Updated last week
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Updated 3 months ago
- scalable multiscale image pyramids in python☆29Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- ☆41Updated last year
- Python based viewer for large mulit-dimensional datasets.☆20Updated 5 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 5 months ago
- ☆17Updated 5 months ago
- A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.☆139Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated this week
- Streaming directly to Zarr on the file system or S3☆20Updated this week
- A 3D interactivity toolbox for napari☆37Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 3 months ago
- ☆23Updated last week
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 2 months ago
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Updated 4 years ago