alegarra / gs3
GS3, software for genomic prediction and whole genome Bayesian analysis
☆10Updated 7 years ago
Alternatives and similar repositories for gs3:
Users that are interested in gs3 are comparing it to the libraries listed below
- https://filippob.github.io/introduction_to_gwas/☆20Updated 9 months ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆37Updated last year
- Module for analysing admixture graphs☆28Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Shiny apps for teaching Population Genetics☆62Updated 2 years ago
- ☆30Updated 3 weeks ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- A tutorial of the BLUPF90 family programs☆20Updated 5 years ago
- ☆16Updated last year
- Mixed Model Package For Genome-wide association mapping.☆17Updated 5 years ago
- ☆43Updated last week
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- ☆20Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated this week
- Generalized linear Mixed Model Association Tests☆41Updated last year
- ☆21Updated 2 years ago
- Perform GWAS using the FarmCPU model.☆23Updated 3 months ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- Fitting latent factor mixed models☆12Updated 4 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆46Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- ☆17Updated 9 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 3 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago