rprops / MetaG_analysis_workflow
☆13Updated 7 years ago
Alternatives and similar repositories for MetaG_analysis_workflow:
Users that are interested in MetaG_analysis_workflow are comparing it to the libraries listed below
- ☆18Updated 4 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- ☆24Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- ☆47Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Gene Absence Presence Identification tool.☆26Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- ☆13Updated 7 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Bacterial taxonomy construction and evaluation in R☆13Updated 11 months ago