☆14Dec 12, 2017Updated 8 years ago
Alternatives and similar repositories for MetaG_analysis_workflow
Users that are interested in MetaG_analysis_workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆25Jul 22, 2026Updated 3 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- I've always wondered why there are so few games in R.☆13Nov 21, 2022Updated 3 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆19Oct 8, 2026Updated 3 weeks ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- ☆21Updated this week
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆64Mar 25, 2024Updated 2 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- ☆14Jul 13, 2020Updated 6 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 5 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆95Nov 24, 2025Updated 11 months ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆45Aug 19, 2026Updated 2 months ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- An interactive radial tree for functional hierarchies and omics data visualization☆25Mar 27, 2026Updated 7 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- The carbfix.dat thermodynamic database for PHREEQC☆19Jul 24, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- Tools for biogas research in R: process biogas data and predict biogas production☆16Mar 17, 2026Updated 7 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆14Jun 25, 2019Updated 7 years ago
- Combined de novo transcriptome assembly - multiple assemblers - multiple parameters☆18Dec 1, 2021Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Apr 1, 2023Updated 3 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆27Nov 16, 2023Updated 2 years ago