rprops / MetaG_analysis_workflowLinks
☆14Updated 7 years ago
Alternatives and similar repositories for MetaG_analysis_workflow
Users that are interested in MetaG_analysis_workflow are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- GraftM - Rapid community profiles from metagenomes☆47Updated 2 weeks ago
- ☆37Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- ☆20Updated last year
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Updated 8 years ago
- ☆24Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆16Updated last week
- ☆54Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated 3 weeks ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago