Sorts amplicons from Nanopore sequencing data based on similarity
☆45Oct 9, 2025Updated 8 months ago
Alternatives and similar repositories for amplicon_sorter
Users that are interested in amplicon_sorter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15May 1, 2025Updated last year
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- ☆34May 29, 2024Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆37Jun 4, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 9 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 3 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 8 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- ☆255Jun 2, 2026Updated last month
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jun 28, 2026Updated last week
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 6 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆52Sep 24, 2025Updated 9 months ago
- Filtering and trimming of long read sequencing data☆218Jan 16, 2023Updated 3 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆378Jun 25, 2026Updated last week
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Jun 11, 2024Updated 2 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- VIGOR4☆22Aug 15, 2025Updated 10 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jun 16, 2026Updated 2 weeks ago
- De novo clustering of long transcript reads into genes☆25Dec 15, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextstrain build for avian influenza viruses☆28Updated this week
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Metagenomic Analysis in Real Time☆30Jun 23, 2026Updated last week
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆941Apr 3, 2026Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year