avierstr / amplicon_sorterLinks
Sorts amplicons from Nanopore sequencing data based on similarity
☆38Updated 2 months ago
Alternatives and similar repositories for amplicon_sorter
Users that are interested in amplicon_sorter are comparing it to the libraries listed below
Sorting:
- Reorients assembled microbial sequences☆124Updated 4 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆45Updated 8 months ago
- IS mapping software☆56Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆45Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆83Updated last year
- SeqSero2☆38Updated last year
- Foreign Contamination Screening caller scripts and documentation☆133Updated 4 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Interactive quality assessment of genome assemblies☆104Updated 3 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 6 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆29Updated 3 weeks ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆49Updated 2 weeks ago