Sorts amplicons from Nanopore sequencing data based on similarity
☆41Oct 9, 2025Updated 5 months ago
Alternatives and similar repositories for amplicon_sorter
Users that are interested in amplicon_sorter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆66Apr 21, 2025Updated 11 months ago
- ☆32May 29, 2024Updated last year
- ☆15May 1, 2025Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 5 months ago
- ☆244Mar 2, 2026Updated 3 weeks ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 4 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 9 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆50Sep 24, 2025Updated 6 months ago
- Filtering and trimming of long read sequencing data☆215Jan 16, 2023Updated 3 years ago
- a simple tool for listing conda environments with descriptions☆14Mar 28, 2025Updated 11 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆344Mar 20, 2026Updated last week
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 6 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆115Nov 20, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Jun 11, 2024Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- VIGOR4☆21Aug 15, 2025Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- De novo clustering of long transcript reads into genes☆20Dec 15, 2025Updated 3 months ago
- Nextstrain build for avian influenza viruses☆27Feb 13, 2026Updated last month
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆129Jan 22, 2025Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- ☆21Jan 23, 2026Updated 2 months ago
- ☆23Sep 27, 2019Updated 6 years ago