An R Package for Integrated Analysis and Visualization of Microbiome Data
☆19Oct 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for rbiom
Users that are interested in rbiom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomics calibration R package☆21Feb 15, 2022Updated 4 years ago
- R Package | Interpretation and Diagnostics for 'lme4' Hierarchical Models☆19Apr 6, 2025Updated last year
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Sep 4, 2024Updated 2 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆35Aug 26, 2024Updated 2 years ago
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 6 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 3 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated last month
- ☆14Dec 12, 2017Updated 8 years ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Sep 25, 2026Updated last month
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- A package and environment manager for R☆20Mar 8, 2024Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Mar 6, 2024Updated 2 years ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated 2 months ago
- Main Wiki • GitHub Issues • GitHub Web Site☆13Sep 12, 2025Updated last year
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Patterned Fills for R's ggplot2 and grid Graphics☆14Oct 2, 2026Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆50Jun 19, 2026Updated 4 months ago
- At P2PU, learning is guided by people, passion, and projects. We’ve created this Badge platform to spark feedback between Experts and Lea…☆14Jun 28, 2023Updated 3 years ago
- INACTIVE - http://mzl.la/ghe-archive - Mozilla Clubs content, issues and projects☆12Dec 18, 2017Updated 8 years ago
- ☆14Jul 12, 2022Updated 4 years ago
- Create local study groups and learn together.☆15Oct 7, 2026Updated last month
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Microbiome analysis☆59Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 3 months ago
- ARG normalization by mapping to the ARO ontology.☆71Jul 10, 2026Updated 3 months ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 3 years ago
- Biomark Fluidigm qPCR data set: processing and analysis☆10Apr 8, 2024Updated 2 years ago