royerlab / napari-segment-anythingLinks
Segment Anything Model (SAM) native Qt UI
☆210Updated last year
Alternatives and similar repositories for napari-segment-anything
Users that are interested in napari-segment-anything are comparing it to the libraries listed below
Sorting:
- Segment anything with our Napari integration of Meta AI's Segment Anything Model (SAM)!☆243Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆114Updated this week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆136Updated last week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Segment Anything for Microscopy☆635Updated this week
- Segment Anything Model API☆107Updated 2 weeks ago
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆146Updated 8 months ago
- An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging tech…☆67Updated 6 months ago
- Python module to analyse skeleton (thin object) images☆139Updated 3 months ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆157Updated last year
- PyTorch implementation of SPOCO☆32Updated last year
- official implementation of the PatchPerPix instance segmentation method☆35Updated 2 years ago
- ☆205Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- Segment Anything for Medical Imaging☆28Updated last month
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆122Updated 3 weeks ago
- ☆207Updated 2 weeks ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆26Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆190Updated this week
- Native Qt interface for Meta's Segment Anything 2 in Images and Videos☆30Updated last year
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 6 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 11 months ago
- A python algorithm for tracking cells in 3D deforming organs☆67Updated 2 months ago
- ☆21Updated 3 years ago
- The ImageJ plugin to run deep-learning models☆97Updated 2 months ago
- Python package for deep learning based image to image transformation☆53Updated 2 months ago