π¬ MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Perfect for automating microscopy workflows and building intelligent image analysis tools.
β37Mar 25, 2026Updated 3 months ago
Alternatives and similar repositories for napari-mcp
Users that are interested in napari-mcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexiblβ¦β18Apr 5, 2026Updated 3 months ago
- A plugin to read whole slide images within napari.β21Nov 24, 2025Updated 7 months ago
- Annotation of filaments and other curvilinear structures in 3D.β12Oct 9, 2023Updated 2 years ago
- Generate multifunctional and macro recordable GUIs from Python classesβ46Jun 23, 2026Updated 3 weeks ago
- A web-based, time-series visualizer for tracked segmented data.β17Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fully scalable robust image feature extraction library.β29Updated this week
- A napari plugin for zarr backed OME-NGFF imagesβ53Jul 13, 2026Updated last week
- β14Jan 25, 2024Updated 2 years ago
- β27Jan 27, 2026Updated 5 months ago
- A stable diffusion demo for napariβ11Jun 7, 2026Updated last month
- ilastik plugin for napariβ15Mar 2, 2026Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcherβ19Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.β46May 1, 2025Updated last year
- β26Jun 3, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reference implementation of the Graph Exchange File Formatβ41Updated this week
- Interactive visualization and sharing of cell tracking data in the browserβ48Jun 23, 2026Updated 3 weeks ago
- β38Mar 22, 2024Updated 2 years ago
- Rust extension module for FIJI-like colormapping and channel blendingβ21Jun 24, 2026Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.β56Nov 13, 2025Updated 8 months ago
- Multiple file format reading directly into napari using pure Pythonβ38Oct 15, 2025Updated 9 months ago
- Paint segmentations directly to on-disk/remote zarr arraysβ16Mar 25, 2026Updated 3 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking dataβ24Updated this week
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)β10Feb 28, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for unsupervised analysis of spatial (prote)omics data.β17Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napariβ22Updated this week
- Modern Bio-Formats wrapper with clean lazy Python APIβ22Jun 25, 2026Updated 3 weeks ago
- napari widgets for start-to-finish batch processingβ15Jun 1, 2026Updated last month
- Streaming directly to Zarr on the file system or S3β30Jul 13, 2026Updated last week
- Speed up coding/extending image analysis in Python.β37May 9, 2026Updated 2 months ago
- A multi-dimensional spatial image data structure for scientific Python.β44Aug 8, 2025Updated 11 months ago
- Whole slide image registration through wsireg in napari.β12Apr 21, 2023Updated 3 years ago
- GPU-accelerated Image Processing library for Pythonβ62Jul 8, 2026Updated last week
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadataβ56Updated this week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.β18Nov 10, 2022Updated 3 years ago
- A 3D interactivity toolbox for napariβ37Jul 8, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datasβ¦β11Oct 24, 2023Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of imagesβ19Apr 8, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.β19Dec 9, 2025Updated 7 months ago
- Interactive and integrated analysis of multiplexed tissue microarraysβ15Jul 13, 2026Updated last week