Alternatives and similar repositories for bioimageio-chatbot

Users that are interested in bioimageio-chatbot are comparing it to the libraries listed below

• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆83Updated last week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 5 months ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆98Updated last week
• joonkeekim / mediar-napari
  ☆21Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆84Updated last year
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆70Updated 11 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last month
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆84Updated 2 months ago
• KerenLab / CellSighter
  ☆37Updated 2 years ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆153Updated 3 weeks ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆88Updated 2 weeks ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 4 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆133Updated 2 weeks ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆145Updated this week
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆76Updated 5 months ago
• instanseg / instanseg
  ☆208Updated this week
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆34Updated 7 months ago
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆130Updated 5 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 2 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆191Updated this week
• aafkegros / Blender_for_Biologists_2023
  ☆39Updated last year
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆75Updated this week
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated 3 weeks ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆99Updated 2 years ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆21Updated 2 weeks ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆38Updated last month
• AllenCell / aics-ml-segmentation
  ☆32Updated 6 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆48Updated 5 months ago