Your Personal Assistant in Computational Bioimaging.
☆49Mar 28, 2025Updated last year
Alternatives and similar repositories for bioimageio-chatbot
Users that are interested in bioimageio-chatbot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆13May 30, 2022Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Python libraries for loading, running and packaging bioimage.io models☆40Sep 15, 2026Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Aug 27, 2026Updated 3 weeks ago
- Python project containing Ice remoting code for OMERO☆28Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆19Dec 16, 2024Updated last year
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated 2 years ago
- A napari plugin to process and analyse images with chatGPT!☆302Feb 14, 2026Updated 7 months ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- ☆14Jun 4, 2023Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 9 months ago
- Deep learning based spot detection for FISH images.☆35Jan 7, 2026Updated 8 months ago
- ☆17Jul 30, 2024Updated 2 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆30Jun 10, 2026Updated 3 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆101Mar 24, 2026Updated 6 months ago
- mcib3d core library for 3D ImageJ suite☆16Oct 6, 2022Updated 3 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Sep 2, 2026Updated 3 weeks ago
- Easy Volumetric Segmentation with Deep Learning☆29Mar 30, 2026Updated 5 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆157Jan 11, 2026Updated 8 months ago
- A toolkit for processing multiplexed tissue images☆68Aug 31, 2026Updated 3 weeks ago
- GPU-accelerated image processing for everyone☆60Jul 4, 2024Updated 2 years ago
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆64Updated this week
- ☆14May 17, 2024Updated 2 years ago
- collection of mass spectrometry imaging workflows☆22Mar 17, 2026Updated 6 months ago
- Spotiflow plugin for napari☆19May 19, 2026Updated 4 months ago
- Specification for the bioimage.io model description file.☆23Sep 15, 2026Updated last week
- Universal 3D Sample Software☆14Sep 1, 2023Updated 3 years ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Mar 6, 2026Updated 6 months ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- External Module for ITK, implementing Isotropic Wavelets and Riesz Filter for multiscale phase analysis.☆13May 27, 2026Updated 3 months ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Updated this week
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆87Sep 17, 2026Updated last week
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Jul 10, 2026Updated 2 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated 2 months ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 10 months ago