bioimage-io / bioimageio-chatbotView external linksLinks
Your Personal Assistant in Computational Bioimaging.
☆45Mar 28, 2025Updated 10 months ago
Alternatives and similar repositories for bioimageio-chatbot
Users that are interested in bioimageio-chatbot are comparing it to the libraries listed below
Sorting:
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 3 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 4 months ago
- Deep learning based spot detection for FISH images.☆31Jan 7, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆22Dec 2, 2025Updated 2 months ago
- A Board Game to teach co-localization analysis☆13Nov 1, 2024Updated last year
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Python project containing Ice remoting code for OMERO☆27Updated this week
- Python library for reading tiles from wsi tiff-files.☆16Dec 9, 2025Updated 2 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 2 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Feb 3, 2026Updated last week
- GPU-accelerated image processing for everyone☆55Jul 4, 2024Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 7 months ago
- ☆13Dec 7, 2021Updated 4 years ago
- Finds a "vcvars" batch script. This CMake module can be used when configuring a project or when running in cmake -P script mode.☆19Nov 20, 2025Updated 2 months ago
- ☆14May 17, 2024Updated last year
- External Module for ITK, implementing Isotropic Wavelets and Riesz Filter for multiscale phase analysis.☆14Nov 12, 2025Updated 3 months ago
- ☆14Jun 4, 2023Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Jan 11, 2026Updated last month
- Universal 3D Sample Software☆14Sep 1, 2023Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated last week
- ☆72Feb 14, 2025Updated 11 months ago
- ☆16Jul 30, 2024Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated 10 months ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆38Dec 5, 2025Updated 2 months ago
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 9 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated last month
- Model repository for bioimage.io☆17Aug 7, 2023Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Nov 19, 2025Updated 2 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆176Nov 11, 2025Updated 3 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- A napari plugin to process and analyse images with chatGPT!☆284Updated this week
- The RPC library used in ImJoy.☆25Jul 23, 2024Updated last year
- Plugins for bone image analysis☆24Feb 5, 2026Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Raw format to OME-TIFF converter☆56Jan 21, 2026Updated 3 weeks ago
- Specification for the bioimage.io model description file.☆23Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Oct 7, 2025Updated 4 months ago