Detecting differentially interacting genomic regions from Hi-C contact maps
☆12Mar 11, 2024Updated 2 years ago
Alternatives and similar repositories for DiffGR
Users that are interested in DiffGR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 9 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jan 30, 2020Updated 6 years ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- R package to evaluate the reproducibility of Hi-C data☆28Jun 23, 2023Updated 3 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Jan 18, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated 2 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆71Sep 15, 2026Updated last month
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- Hi-C data analysis tool☆13May 31, 2017Updated 9 years ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated last year
- Package for analysis and characterization of differential TADs☆27Aug 21, 2026Updated last month
- ☆16Oct 8, 2026Updated last week
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Updated this week
- ☆16Apr 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- ☆22Apr 23, 2024Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆15Oct 3, 2026Updated 2 weeks ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- GENome Organisation Visual Analytics☆91Feb 3, 2026Updated 8 months ago
- R package wrapping bedtools☆46Mar 19, 2025Updated last year
- mouse_fullStack_annotations☆16Jun 29, 2023Updated 3 years ago