Alternatives and similar repositories for pymuscle5:

Users that are interested in pymuscle5 are comparing it to the libraries listed below

• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated last week
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last week
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆21Updated this week
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆52Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆34Updated 2 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆44Updated last month
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 5 months ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆21Updated 2 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆25Updated last week
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 9 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆47Updated 5 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 3 weeks ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆16Updated 6 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆32Updated last week
• althonos / gb-io.py
  A Python interface to gb-io, a fast GenBank parser written in Rust.
  ☆17Updated this week
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 4 months ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…
  ☆11Updated 7 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆82Updated 2 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆46Updated last month
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆46Updated 5 months ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 2 months ago
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆18Updated last month
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆18Updated 8 months ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆17Updated last month
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated this week