Alternatives and similar repositories for pymuscle5

Users that are interested in pymuscle5 are comparing it to the libraries listed below

• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆35Updated last week
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆19Updated 6 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆28Updated 4 months ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆20Updated 7 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• NicolaDM / phastSim
  fast sequence evolution simulation for SARS-CoV-2 and similar
  ☆20Updated 4 months ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆73Updated 2 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆53Updated 11 months ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆24Updated 2 years ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…
  ☆13Updated last month
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆71Updated 2 months ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆22Updated 8 months ago
• BackofenLab / CRISPRidentify
  ☆30Updated 8 months ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆27Updated this week
• rcedgar / palmscan
  ☆26Updated 2 months ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆22Updated 7 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆18Updated last week
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• kshulgina / codetta
  ☆50Updated 3 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆51Updated 2 weeks ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆30Updated last year
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated last week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago