Alternatives and similar repositories for pymuscle5

Users that are interested in pymuscle5 are comparing it to the libraries listed below

• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆25Updated last month
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated last week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last month
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated last year
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆25Updated this week
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆67Updated this week
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated 2 years ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆18Updated 4 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 2 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 2 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated last month
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆21Updated 3 weeks ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆17Updated 10 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆48Updated last week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated last week
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆35Updated 3 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆49Updated 9 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆20Updated 4 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 9 months ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆23Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆30Updated 5 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• nanoporetech / DTR-phage-pipeline
  ☆16Updated last year
• DNKonanov / Snapper
  snapper
  ☆14Updated 11 months ago