althonos / pymuscle5Links
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
☆21Updated last year
Alternatives and similar repositories for pymuscle5
Users that are interested in pymuscle5 are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆26Updated 2 months ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆32Updated last month
- Learning and Aligning Large Protein Families with support of protein language models.☆26Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated 3 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- ☆31Updated 3 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆18Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆12Updated this week
- MGnify API toolkit☆20Updated 5 months ago
- Protein Sequence Annotation with Language Models☆23Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- SWORD - a highly efficient protein database search☆26Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 11 months ago
- Reference-guided multiple sequence alignment of viral genomes☆69Updated last month
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Efficient calculation of phylogenetic distance matrices.☆48Updated 9 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Plot multiple sequence alignment (MSA)☆15Updated 9 months ago
- ☆16Updated 3 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated last month
- Nail is an Alignment Inference tooL☆49Updated last week
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 6 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 weeks ago