Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
☆24Feb 23, 2026Updated last week
Alternatives and similar repositories for pymuscle5
Users that are interested in pymuscle5 are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Oct 15, 2025Updated 4 months ago
- Cython bindings and Python interface to HMMER3.☆160Updated this week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Jan 5, 2026Updated 2 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Feb 23, 2026Updated last week
- A Rust library for parsing, writing and manipulating Genbank sequence files☆22Apr 20, 2025Updated 10 months ago
- Just another minhash implementation.☆12Feb 25, 2026Updated last week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆14Dec 10, 2018Updated 7 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Feb 26, 2026Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 3 months ago
- Deep learning-based language model for glycan sequences☆17Jan 17, 2020Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 6 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆36Dec 30, 2025Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Jan 12, 2024Updated 2 years ago
- A high efficiency binary format for sequencing data☆96Feb 25, 2026Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Nov 24, 2025Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 3 weeks ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆16Feb 22, 2026Updated last week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated last year
- ☆16Updated this week
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- protein utilities in Rust☆32Nov 9, 2025Updated 3 months ago
- ☆14Jan 31, 2020Updated 6 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- ☆12May 6, 2022Updated 3 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 2 years ago