rhysnewell / ChIP-R
Assessing the reproducibility of proccessed ChIP-seq peaks
☆9Updated 3 years ago
Related projects: ⓘ
- ☆17Updated 5 years ago
- Motif manipulation functions for R.☆25Updated last week
- Detection of differential translated genes using Ribo-seq☆13Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated last month
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆27Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆17Updated 5 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆14Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆21Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated 10 months ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 4 years ago
- ☆25Updated 3 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated last month
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆19Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Tutorial Website☆51Updated 3 years ago
- Peak caller for CUT&TAG data☆23Updated 2 years ago
- ☆23Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆30Updated 2 years ago
- RNA editing tests☆15Updated 3 years ago
- ☆30Updated 5 years ago