tavareshugo / tutorial_DESeq2_contrasts
☆59Updated 10 months ago
Alternatives and similar repositories for tutorial_DESeq2_contrasts:
Users that are interested in tutorial_DESeq2_contrasts are comparing it to the libraries listed below
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Links to ATAC-seq analysis tools☆63Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- Basic workflow for ATAC-seq analysis☆75Updated last year
- Analysis pipeline for ATAC-seq data☆48Updated last year
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- ☆61Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- ☆84Updated 3 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆89Updated this week
- A list of alternative splicing analysis resources☆43Updated 4 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- Tutorial Website☆57Updated 4 years ago
- ☆57Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 10 months ago
- ☆116Updated last year
- ☆71Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Visualizing transcript structure and annotation using ggplot2☆149Updated 7 months ago