tavareshugo / tutorial_DESeq2_contrasts
☆56Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for tutorial_DESeq2_contrasts
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- Basic workflow for ATAC-seq analysis☆70Updated 9 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆103Updated 4 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆81Updated last month
- Publication quality NGS track plotting☆108Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- Tutorial Website☆53Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- Analysis pipeline for ATAC-seq data☆38Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated 2 years ago
- Testing differences in cell type proportions from single-cell data.☆94Updated last week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- ☆60Updated last year
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 8 months ago
- An R interface to the MEME Suite☆46Updated last month
- SNV calling from single cell sequencing☆84Updated last week
- Tools for single-cell data processing☆118Updated 5 months ago
- Visualizing transcript structure and annotation using ggplot2☆131Updated 3 months ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 6 months ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆24Updated 3 weeks ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- ☆74Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week