tavareshugo / tutorial_DESeq2_contrastsLinks
☆63Updated last year
Alternatives and similar repositories for tutorial_DESeq2_contrasts
Users that are interested in tutorial_DESeq2_contrasts are comparing it to the libraries listed below
Sorting:
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆105Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated 2 weeks ago
- Links to ATAC-seq analysis tools☆74Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆81Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Simplify functional enrichment results☆121Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- Tutorial Website☆60Updated 4 years ago
- Visualizing transcript structure and annotation using ggplot2☆163Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- ☆91Updated 5 months ago
- RNA-Seq analysis workflow