Alternatives and similar repositories for DSRC

Users that are interested in DSRC are comparing it to the libraries listed below

• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆74Updated 9 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆64Updated 4 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆46Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 5 years ago
• lh3 / sgdp-fermi
  FermiKit small variant calls for public SGDP samples
  ☆17Updated 9 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated last year
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆44Updated 6 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆110Updated 3 months ago
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆88Updated 6 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆52Updated 7 years ago
• relipmoc / skewer
  ☆96Updated 3 years ago
• smarco / gem3-mapper
  GEM-Mapper v3
  ☆58Updated last month
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆81Updated 4 months ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆66Updated 7 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 4 years ago
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆104Updated 3 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆50Updated 4 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆36Updated 2 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 6 years ago
• lh3 / CHM-eval
  ☆55Updated 5 years ago
• vgteam / graph-genomics-review
  Pangenome graphs (review article on graph-based pangenomic methods)
  ☆72Updated 5 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 4 months ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆68Updated 11 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago