Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
☆19Oct 4, 2022Updated 4 years ago
Alternatives and similar repositories for orpheum
Users that are interested in orpheum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- Index kmtricks bf matrices☆49Oct 6, 2026Updated last week
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- DFAST Quality Control: Taxonomy and completeness check☆19Jun 17, 2026Updated 4 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- X things you should take into consideration if you code for big data analysis☆23May 29, 2018Updated 8 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- A community driven catalog of tools and products that are useful in the world of high performance computing (HPC)☆11Jul 3, 2025Updated last year
- ☆12Jun 29, 2018Updated 8 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆20Sep 21, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Sep 4, 2024Updated 2 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- LFQC: Fastq Compression Algorithm☆13Jan 6, 2016Updated 10 years ago
- SS^3☆16Aug 19, 2021Updated 5 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- Declarative, Compositional Url Handling for WAI☆10Sep 28, 2023Updated 3 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- bleeding edge (python) packages...☆15Nov 22, 2015Updated 10 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- A pipeline to identify BLAST hits and perform phylogenetic analysis across multiple queries and local genome databases☆28Oct 9, 2026Updated last week
- A R Bioconductor package for accessing MyGene.info services☆12Jun 22, 2018Updated 8 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Find hot data sets in your area (of research)!☆16Dec 20, 2018Updated 7 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- Truly parallel gzip decompression☆124Aug 20, 2019Updated 7 years ago
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- Just another minhash implementation.☆13Sep 14, 2026Updated last month
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆62Dec 27, 2022Updated 3 years ago
- ☆10Mar 24, 2025Updated last year