czbiohub-sf / orpheum
Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
☆18Updated 2 years ago
Alternatives and similar repositories for orpheum:
Users that are interested in orpheum are comparing it to the libraries listed below
- map Illumina metagenomes to genomes!☆37Updated last month
- UMCU Genetics Nextflow modules☆27Updated 2 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated 2 weeks ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 2 years ago
- Build sourmash databases for genbank.☆12Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated 5 months ago
- A genome browser in your Jupyter notebook☆30Updated 3 weeks ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- Annotating principal splice isoforms☆14Updated 3 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- k-mer similarity analysis pipeline☆20Updated this week
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆20Updated 2 months ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Automated optimisation of de-novo transcriptome assembly☆25Updated 9 years ago
- Long-read splice alignment with high accuracy☆60Updated 3 months ago
- ☆19Updated 7 years ago
- BED QC tool (in the making)☆15Updated 2 years ago
- blast, shmlast☆21Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated 3 months ago