A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
☆170Apr 18, 2022Updated 4 years ago
Alternatives and similar repositories for gtz
Users that are interested in gtz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast lossless FASTQ compressor with ultra-high compression ratio☆157May 28, 2025Updated last year
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 10 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- DSRC - DNA Sequence Reads Compressor☆59May 20, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The next version of bwa-mem☆868Oct 15, 2025Updated last year
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆19May 26, 2022Updated 4 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆191Oct 19, 2026Updated 2 weeks ago
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆118Oct 13, 2023Updated 3 years ago
- VCF-kit: Assorted utilities for the variant call format☆136May 22, 2026Updated 5 months ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Next generation sequencing reads de novo assembler.☆241Sep 20, 2025Updated last year
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- Tools for working with SAM/BAM data☆614Dec 22, 2024Updated last year
- Official code repository for GATK versions 4 and up☆2,009Updated this week
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,454Oct 7, 2026Updated 3 weeks ago
- Accelerated kernel library for genomics☆113Oct 12, 2026Updated 3 weeks ago
- ☆32Dec 16, 2022Updated 3 years ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated 2 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- Unofficial repo for software vendoring or packaging purposes☆22Oct 23, 2017Updated 9 years ago
- Golang for Bioinformatics☆32Aug 16, 2016Updated 10 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 5 months ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Copy number variant detection from targeted DNA sequencing☆617Oct 15, 2026Updated 2 weeks ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 3 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆20Feb 24, 2017Updated 9 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆17Nov 20, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,262May 19, 2026Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- software tools for haplotype assembly from sequence data☆234Feb 9, 2025Updated last year
- ☆19Jul 6, 2023Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago