lutsik / CellTypeInferenceMethodsLinks
A public list of computational methods for cell type inference from genome-scale DNA methylation data
☆13Updated 6 years ago
Alternatives and similar repositories for CellTypeInferenceMethods
Users that are interested in CellTypeInferenceMethods are comparing it to the libraries listed below
Sorting:
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Gene-level general linear mixed model☆22Updated 5 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 5 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆51Updated 7 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- ☆15Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆40Updated 7 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- causal TWAS (cTWAS)☆43Updated this week
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- ☆12Updated 4 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago