lutsik / CellTypeInferenceMethodsLinks
A public list of computational methods for cell type inference from genome-scale DNA methylation data
☆13Updated 6 years ago
Alternatives and similar repositories for CellTypeInferenceMethods
Users that are interested in CellTypeInferenceMethods are comparing it to the libraries listed below
Sorting:
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated 2 weeks ago
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 5 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- ☆41Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Adding random effects model to the METAL software☆15Updated 2 years ago
- causal TWAS (cTWAS)☆47Updated 2 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 4 months ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 4 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- ☆35Updated 2 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- ☆24Updated 4 years ago
- Data and code for the Effector index☆14Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 4 years ago