lutsik / CellTypeInferenceMethodsLinks
A public list of computational methods for cell type inference from genome-scale DNA methylation data
☆13Updated 6 years ago
Alternatives and similar repositories for CellTypeInferenceMethods
Users that are interested in CellTypeInferenceMethods are comparing it to the libraries listed below
Sorting:
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated 4 months ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Modelling DNA methylation profiles☆23Updated 5 years ago
- ☆41Updated 7 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- ☆35Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated last month
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated last month
- Adding random effects model to the METAL software☆14Updated 2 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Updated 4 years ago
- causal TWAS (cTWAS)☆45Updated last month
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 10 months ago
- From IDAT to beta.☆25Updated 7 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 8 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago