LANL-Bioinformatics / FaQCs
Quality Control of Next Generation Sequencing Data
☆20Updated 4 years ago
Alternatives and similar repositories for FaQCs
Users that are interested in FaQCs are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆71Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- ☆51Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated 11 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- An awk-like VCF parser☆56Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆78Updated 11 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆15Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago