LANL-Bioinformatics / FaQCs
Quality Control of Next Generation Sequencing Data
☆20Updated 4 years ago
Alternatives and similar repositories for FaQCs:
Users that are interested in FaQCs are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 11 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago