LANL-Bioinformatics / FaQCsLinks
Quality Control of Next Generation Sequencing Data
☆20Updated 3 months ago
Alternatives and similar repositories for FaQCs
Users that are interested in FaQCs are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- ☆78Updated 11 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- ☆63Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- Adapters for trimming☆30Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago