SchlossLab / schtools
Schloss Lab Tools for Reproducible Microbiome Research 💩
☆30Updated last year
Alternatives and similar repositories for schtools:
Users that are interested in schtools are comparing it to the libraries listed below
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆42Updated 9 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- ☆23Updated 6 years ago
- functions for analyzing phyloseq data☆26Updated 3 weeks ago
- Speedy versions of phyloseq functions☆47Updated 10 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Tools for visualising microbial community amplicon data☆67Updated 9 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- ☆39Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Simple R utilities for working with HMMER☆18Updated 5 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- ☆20Updated 4 years ago
- SHallow shOtGUN profiler☆53Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- ☆21Updated 4 years ago