Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
☆68Mar 3, 2024Updated 2 years ago
Alternatives and similar repositories for PrismNet
Users that are interested in PrismNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- VRmol: an Integrative Web-Based Virtual Reality System to Explore Macromolecular Structure☆36Dec 24, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- ☆29Nov 6, 2022Updated 3 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity (Journal of Structural Biology)☆13Feb 24, 2026Updated 3 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆372May 27, 2025Updated 11 months ago
- Identifying bioactive peptide function using multi-label deep learning☆10Nov 16, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆12Mar 7, 2024Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65May 8, 2026Updated 2 weeks ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- 3D Deep Learning works☆142May 10, 2019Updated 7 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ☆22Jul 21, 2023Updated 2 years ago
- Automatic CHARMM-GUI browser interaction with Python☆19Mar 20, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 2 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆83May 5, 2026Updated 2 weeks ago
- a deep-learning-based framework for studying m6A☆20Jul 25, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 4 months ago
- Deconvolution of RNA Alternative COnformations☆15May 14, 2026Updated last week
- A fast sampling and analysis tool for biomolecules☆17May 2, 2026Updated 3 weeks ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- ☆12Aug 12, 2022Updated 3 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆28Sep 9, 2025Updated 8 months ago
- CellPolaris☆14Jan 11, 2026Updated 4 months ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.☆40Feb 28, 2024Updated 2 years ago
- ☆18Jan 2, 2025Updated last year
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago