Alternatives and similar repositories for tai

Users that are interested in tai are comparing it to the libraries listed below

• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated 6 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 5 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆116Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated last week
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆61Updated 5 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 weeks ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 7 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆30Updated 3 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• dansondergaard / tmhmm.py
  A transmembrane helix finder in Python 3.
  ☆40Updated 2 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• sanderlab / alignmentviewer
  Multiple sequence alignment visualizer
  ☆30Updated 2 years ago
• sanderlab / AlignmentViewer2.0
  ☆24Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• jcg / d-tailor
  ☆14Updated 6 years ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 3 years ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆28Updated this week
• KatyBrown / CIAlign
  ☆132Updated last year
• Computational-conSequences / SequenceTools
  Programs used in the lab for various tasks
  ☆13Updated 2 years ago
• pegi3s / dockerfiles
  This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell…
  ☆53Updated last week
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 2 months ago