Alternatives and similar repositories for RNAFramework

Users that are interested in RNAFramework are comparing it to the libraries listed below

• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 3 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆57Updated 10 months ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆17Updated 5 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆50Updated last week
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 4 months ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆19Updated 9 months ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆62Updated last week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆43Updated last week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆79Updated 2 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆39Updated 4 months ago
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• klarman-cell-observatory / Riboseq-nuORFs
  ☆11Updated 6 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 3 years ago
• TRON-Bioinformatics / TCLP
  an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
  ☆12Updated last year
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 10 months ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 11 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆51Updated 3 weeks ago