Alternatives and similar repositories for metabolomics2018

Users that are interested in metabolomics2018 are comparing it to the libraries listed below

• rformassspectrometry / CompoundDb

  View on GitHub
  Creating and using (chemical) compound databases
  ☆19Jan 28, 2026Updated 2 weeks ago
• DorresteinLaboratory / XCMS3_FeatureBasedMN

  View on GitHub
  ☆14Apr 8, 2022Updated 3 years ago
• shuzhao-li-lab / espol-workshop

  View on GitHub
  5-day workshop on Metabolomics and Data Analysis
  ☆18Sep 1, 2019Updated 6 years ago
• computational-metabolomics / msPurity

  View on GitHub
  A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16May 10, 2024Updated last year
• ualr-Rgroup / metabolomics-in-r

  View on GitHub
  Supporting material for "Processing and visualization of metabolomics data using R"
  ☆20Jan 3, 2017Updated 9 years ago
• secimTools / SECIMTools

  View on GitHub
  A set of metabolomics tools for use in Galaxy
  ☆11Sep 2, 2022Updated 3 years ago
• Viant-Metabolomics / Galaxy-M

  View on GitHub
  Metabolomics Tools for Galaxy
  ☆21Nov 22, 2016Updated 9 years ago
• iomega / spec2vec_gnps_data_analysis

  View on GitHub
  Analysis and benchmarking of mass spectra similarity measures using gnps data set.
  ☆24Aug 13, 2021Updated 4 years ago
• shuzhao-li-lab / PythonCentricPipelineForMetabolomics

  View on GitHub
  Python pipeline for metabolomics data preprocessing, QC, standardization and annotation
  ☆16Dec 5, 2025Updated 2 months ago
• MassBank / RMassBank

  View on GitHub
  Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html
  ☆13Nov 30, 2025Updated 2 months ago
• RASpicer / MetabolomicsTools

  View on GitHub
  ☆55Apr 15, 2021Updated 4 years ago
• barupal / ChemRICH

  View on GitHub
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Jul 19, 2024Updated last year
• WMBEdmands / compMS2Miner

  View on GitHub
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆16Apr 19, 2017Updated 8 years ago
• biorack / simile

  View on GitHub
  ☆16Jul 20, 2022Updated 3 years ago
• stanstrup / commonMZ

  View on GitHub
  A collection of common mz values found in mass spectrometry.
  ☆20Jun 13, 2024Updated last year
• coongroup / LipiDex

  View on GitHub
  Lipid identification software for discovery LC-MS/MS
  ☆12Mar 29, 2019Updated 6 years ago
• HUPO-PSI / mzTab

  View on GitHub
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆45Apr 1, 2025Updated 10 months ago
• mobiusklein / ms_peak_picker

  View on GitHub
  A small library to provide peak picking for software processing mass spectrometry data
  ☆23Dec 3, 2024Updated last year
• MASHUOA / MassOmics

  View on GitHub
  Toolkit for untargeted metabolomics profiling
  ☆13Aug 25, 2025Updated 5 months ago
• computational-metabolomics / msp2db

  View on GitHub
  Convert MSP files into a database
  ☆10May 4, 2021Updated 4 years ago
• orsburn / LCMSMethods

  View on GitHub
  The Git Account of LCMSMethods.org
  ☆11Jun 1, 2019Updated 6 years ago
• mohimanilab / MetaMiner

  View on GitHub
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Oct 4, 2021Updated 4 years ago
• phenomecentre / peakPantheR

  View on GitHub
  On-instrument and post-acquisition targeted feature extraction
  ☆13Sep 27, 2025Updated 4 months ago
• SimpleNumber / HUMOS

  View on GitHub
  HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …
  ☆11Mar 10, 2025Updated 11 months ago
• slfan2013 / Shiny-SERRF

  View on GitHub
  ☆12Nov 16, 2021Updated 4 years ago
• gggraca / MetaboAnnotatoR

  View on GitHub
  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets
  ☆13Jan 30, 2026Updated 2 weeks ago
• levitsky / identipy

  View on GitHub
  ☆10Feb 3, 2026Updated last week
• bittremieuxlab / GLEAMS

  View on GitHub
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Aug 16, 2023Updated 2 years ago
• shuzhao-li-lab / asari

  View on GitHub
  asari, metabolomics data preprocessing
  ☆58Jan 29, 2026Updated 2 weeks ago
• ssi-dk / CD-MRG-metabolomics_summerschool_2023

  View on GitHub
  This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…
  ☆12Aug 25, 2023Updated 2 years ago
• optimusmoose / jsms

  View on GitHub
  A modular JavaScript viewer for mass spectrometry data
  ☆12May 20, 2022Updated 3 years ago
• ccdmb / BioDendro

  View on GitHub
  A package to cluster and visualise MS/MS spectral data
  ☆11Feb 26, 2021Updated 4 years ago
• sneumann / CAMERA

  View on GitHub
  This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data
  ☆14May 9, 2025Updated 9 months ago
• berkeley-stat243 / stat243-fall-2021

  View on GitHub
  This repository holds course materials for the fall 2021 offering of Statistics 243 at UC Berkeley.
  ☆16Sep 28, 2022Updated 3 years ago
• biswapriyamisra / metabolomics

  View on GitHub
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Mar 7, 2020Updated 5 years ago
• stanstrup / PredRet

  View on GitHub
  Shiny app for retention time prediction
  ☆10Dec 1, 2025Updated 2 months ago
• eMetaboHUB / MS-CleanR

  View on GitHub
  ☆28Nov 30, 2023Updated 2 years ago
• sneumann / xcms

  View on GitHub
  This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
  ☆216Feb 6, 2026Updated last week
• bittremieuxlab / ANN-SoLo

  View on GitHub
  Spectral library searching using approximate nearest neighbor techniques.
  ☆48Updated this week