Alternatives and similar repositories for MetaboAnalyst_Docker

Users that are interested in MetaboAnalyst_Docker are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• pFindStudio / pFind3
  ☆28Updated 2 weeks ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last month
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last month
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• tidymass / tidymass
  tidymass
  ☆59Updated 3 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated 2 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆26Updated last week
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated last month
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆21Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆26Updated 6 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 5 months ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 7 months ago
• wenbostar / metaX
  metaX: a flexible and comprehensive software for processing omics data.
  ☆26Updated 2 years ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆33Updated 3 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆42Updated this week
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated 2 months ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆26Updated 3 weeks ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 7 months ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆39Updated last year
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month