A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
☆95Jul 23, 2024Updated last year
Alternatives and similar repositories for Cell_BLAST
Users that are interested in Cell_BLAST are comparing it to the libraries listed below
Sorting:
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Jul 6, 2023Updated 2 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆234May 23, 2020Updated 5 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- Bench-marking classification tools for scRNA-seq data☆194Jun 9, 2022Updated 3 years ago
- A tool for semi-automatic cell type classification☆453Feb 24, 2026Updated last week
- ☆18Apr 17, 2025Updated 10 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- ☆27Sep 2, 2021Updated 4 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Nov 7, 2025Updated 3 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 6, 2024Updated last year
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,553Dec 11, 2022Updated 3 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆455Feb 9, 2026Updated 3 weeks ago
- scDeepCluster for Single Cell RNA-seq data☆105Jul 10, 2024Updated last year
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Sep 14, 2020Updated 5 years ago
- ☆36Sep 25, 2022Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Dec 19, 2022Updated 3 years ago
- ☆16Sep 8, 2024Updated last year
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 3 months ago
- A Transcriptomics-Proteomics Integration Pipeline☆18Apr 11, 2024Updated last year
- Paired-seq☆15Jul 17, 2024Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Python☆109Feb 23, 2026Updated last week