A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
☆96Jul 23, 2024Updated 2 years ago
Alternatives and similar repositories for Cell_BLAST
Users that are interested in Cell_BLAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆483Feb 9, 2026Updated 8 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆113Jul 6, 2023Updated 3 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Bench-marking classification tools for scRNA-seq data☆195Jun 9, 2022Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Aug 28, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Novel joint clustering method with scRNA-seq and CITE-seq data☆11Jun 22, 2021Updated 5 years ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- ☆19Jun 2, 2022Updated 4 years ago
- Causal discovery of gene regulatory programs from single-cell genomics☆25Sep 5, 2025Updated last year
- ☆27Sep 2, 2021Updated 5 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆272Jan 10, 2026Updated 9 months ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 5 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆249May 23, 2020Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Single cell interactive plotting tools☆25Jun 12, 2020Updated 6 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆42Mar 31, 2026Updated 7 months ago
- ☆18Apr 17, 2025Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆205Sep 10, 2026Updated last month
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Oct 18, 2023Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆203Mar 16, 2023Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,607Updated this week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,599Dec 11, 2022Updated 3 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆28Nov 7, 2025Updated 11 months ago