Representation Learning for detection of phenotype-associated cell subsets
☆66Oct 24, 2020Updated 5 years ago
Alternatives and similar repositories for CellCnn
Users that are interested in CellCnn are comparing it to the libraries listed below
Sorting:
- A course project that detect cells in image by a simple full convolution neural network. The project is driven by TensorFlow.☆20Jun 6, 2017Updated 8 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆46Feb 15, 2017Updated 9 years ago
- ☆18Mar 15, 2017Updated 8 years ago
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆12Sep 21, 2017Updated 8 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆23Feb 8, 2025Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 8 years ago
- ☆38Mar 24, 2023Updated 2 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Citrus Development Code☆31Apr 14, 2024Updated last year
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago
- Cytometry dATa anALYsis Tools☆75Nov 20, 2025Updated 3 months ago
- Cell detection using a convolutional neueral network☆27Apr 17, 2019Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Training and testing of DeepSEA models.☆15Oct 19, 2015Updated 10 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- A package that provides data analysis pipeline for flow cytometry.☆81Aug 26, 2025Updated 6 months ago
- ☆16Apr 17, 2024Updated last year
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Dec 15, 2020Updated 5 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆24Sep 9, 2017Updated 8 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Store collections of experimental data based on TileDB☆12Feb 23, 2026Updated last week
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Dec 11, 2019Updated 6 years ago
- Several maximum likelihood ICA algorithms, including Picard☆23Sep 13, 2017Updated 8 years ago
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Jan 31, 2025Updated last year
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- Website for the 2018 OHBM hackathon☆11Nov 28, 2022Updated 3 years ago