eiriniar / CellCnnLinks
Representation Learning for detection of phenotype-associated cell subsets
☆66Updated 5 years ago
Alternatives and similar repositories for CellCnn
Users that are interested in CellCnn are comparing it to the libraries listed below
Sorting:
- ☆57Updated 5 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆101Updated last year
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆121Updated 6 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- CellNet: network biology applied to stem cell engineering☆54Updated 2 years ago
- Python utilities for building integrated views of TCGA data.☆32Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆137Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- ☆25Updated 9 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- ASAP : Automated Single-cell Analysis Pipeline☆27Updated 5 months ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆58Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year