Alternatives and similar repositories for alphafold

Users that are interested in alphafold are comparing it to the libraries listed below

• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆44Updated 6 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆97Updated this week
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆239Updated last week
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆86Updated 10 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆42Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆178Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆135Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆13Updated 4 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆105Updated this week
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆58Updated 9 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆79Updated 2 weeks ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 5 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆156Updated last week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 3 weeks ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆125Updated 3 weeks ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆51Updated 2 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 3 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆44Updated last year
• TattaBio / gLM2
  ☆79Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆23Updated last year
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago