UCSC Genome Browser Docker Image
☆17May 12, 2022Updated 3 years ago
Alternatives and similar repositories for docker_ucsc_genome_browser
Users that are interested in docker_ucsc_genome_browser are comparing it to the libraries listed below
Sorting:
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- ☆12Jun 29, 2018Updated 7 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- Fully automated generation of UCSC assembly hubs☆35Oct 2, 2024Updated last year
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆18Oct 12, 2021Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Improving gene isoform quantification with miniQuant☆35Jan 13, 2026Updated last month
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Feb 25, 2026Updated last week
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- RILseq computational protocol☆11Apr 3, 2022Updated 3 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆40Nov 24, 2022Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Feb 25, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆11Sep 22, 2025Updated 5 months ago
- ☆13Apr 22, 2022Updated 3 years ago
- examples of plugins for use by Coursera partners☆13Jun 18, 2025Updated 8 months ago
- ☆10Jun 29, 2021Updated 4 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- automatic update Clinvar db for ANNOVAR☆10Feb 27, 2026Updated last week
- ☆12Jan 31, 2023Updated 3 years ago