BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆18Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 7 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 11 months ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆29Jun 4, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Apr 2, 2015Updated 11 years ago
- A motif discovery tool to detect the occurrences of known motifs☆20Jan 21, 2021Updated 5 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆20Sep 21, 2026Updated last month
- Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…☆12Jan 5, 2022Updated 4 years ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆22Mar 17, 2024Updated 2 years ago
- ☆11Aug 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PCR Primer Quality Control☆77Oct 15, 2026Updated 2 weeks ago
- ☆28Sep 11, 2026Updated last month
- CS-Switch的 Linux CLI & GUI移植版,支持 CLI 命令行和 Tauri 桌面 GUI 两种使用方式☆23Jul 14, 2026Updated 3 months ago
- ☆24Sep 25, 2025Updated last year
- ☆54Jul 27, 2022Updated 4 years ago
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated 2 years ago
- Test of parallel compression acceleration☆17Sep 8, 2024Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Simple Job Manager☆59Jul 20, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html☆14Mar 4, 2026Updated 7 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- Pair-End AssembeR☆36Apr 16, 2014Updated 12 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 8 months ago
- Companion Android app for Sai to interface with Meta AI glasses☆18Aug 26, 2026Updated 2 months ago
- An implementation of the Tool Search Tool in OpenCode as offered by Claude☆25Jan 19, 2026Updated 9 months ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆24May 15, 2026Updated 5 months ago
- ☆13Jun 11, 2026Updated 4 months ago
- Active Learning framework for Natural Language Processing of pathology reports.☆12Dec 8, 2021Updated 4 years ago
- An FPGA-accelerated version of minimap2☆11May 30, 2023Updated 3 years ago
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago