BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆19Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below
Sorting:
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated 10 months ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 5 months ago
- 基于One API的二次开发版本，仅供个人管理渠道使用，请勿用于商业API分发！☆17Mar 7, 2024Updated 2 years ago
- PCR Primer Quality Control☆71Sep 29, 2025Updated 5 months ago
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated last year
- ☆23Mar 13, 2026Updated last week
- Test of parallel compression acceleration☆15Sep 8, 2024Updated last year
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆22Aug 6, 2024Updated last year
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆133Jul 1, 2024Updated last year
- Active Learning framework for Natural Language Processing of pathology reports.☆11Dec 8, 2021Updated 4 years ago
- code related to submission of "Accurate diagnosis of lymphoma on whole slide histopathology images using deep learning"☆10May 12, 2020Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs☆31Nov 22, 2025Updated 3 months ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 2 years ago
- A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html☆14Mar 4, 2026Updated 2 weeks ago
- 秒著，辅助快速生成软件著作权文档☆42Mar 2, 2026Updated 2 weeks ago
- smith-waterman-gotoh alignment algorithm☆17Sep 1, 2017Updated 8 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Feb 21, 2026Updated last month
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- A Repository for Polygenic Indexes☆14May 29, 2023Updated 2 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- ☆16Jan 18, 2023Updated 3 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- Updates to MedPrompt, scoring a new SOTA for the USMLE (MedQA)☆12Oct 23, 2024Updated last year
- BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data☆14Jan 3, 2023Updated 3 years ago
- ☆14Jan 18, 2023Updated 3 years ago
- This repository contains data and other materials related to the DeepPT manuscript☆16Mar 12, 2024Updated 2 years ago
- ☆13Apr 4, 2023Updated 2 years ago
- Deep Learning for Recurrence Score☆18Jun 25, 2024Updated last year
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- genome sequence alignment☆14Oct 9, 2019Updated 6 years ago
- KiwiSDR: BeagleBone web-accessible shortwave receiver and software-defined GPS☆10Mar 6, 2023Updated 3 years ago
- Transformer-ConvNet with Masked AutoEncoder for Cardiac Image Registration☆10Aug 29, 2022Updated 3 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆46Dec 10, 2025Updated 3 months ago
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆11Nov 26, 2022Updated 3 years ago
- Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks☆25Aug 23, 2025Updated 6 months ago