sflorescu / BWA-MEM_GPULinks
BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆16Updated 2 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below
Sorting:
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated 2 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- BWA-MEM program accelerated with the GASAL2 library☆18Updated 5 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆72Updated 10 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆35Updated last month
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆40Updated 4 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆80Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆121Updated 11 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- A tool to call somatic single nucleotide variants.☆41Updated 9 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated 8 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Pair-End AssembeR☆32Updated 11 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆35Updated 8 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Draw Circos in Python☆31Updated 2 years ago
- ☆23Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- ☆21Updated this week
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ☆53Updated 2 years ago
- ☆25Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 8 months ago