BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆18Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆18Oct 14, 2024Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 3 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated 2 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 10 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆57Mar 31, 2023Updated 3 years ago
- CS-Switch的 Linux CLI & GUI移植版,支持 CLI 命令行和 Tauri 桌面 GUI 两种使用方式☆17Jul 14, 2026Updated 3 weeks ago
- PCR Primer Quality Control☆75Updated this week
- Use tensor core to calculate back-to-back HGEMM (half-precision general matrix multiplication) with MMA PTX instruction.☆13Nov 3, 2023Updated 2 years ago
- ☆60Sep 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28Jun 14, 2026Updated last month
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- ScholarMCP - An academic research MCP server with comprehensive literature search, PDF ingestion, and citation management tools. Integrat…☆23Mar 16, 2026Updated 4 months ago
- Parallel cuckoo hashing on GPUs with CUDA☆12Sep 27, 2019Updated 6 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆139Jun 3, 2026Updated 2 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆107Aug 31, 2022Updated 3 years ago
- An implementation of the Tool Search Tool in OpenCode as offered by Claude☆24Jan 19, 2026Updated 6 months ago
- Pair-End AssembeR☆35Apr 16, 2014Updated 12 years ago
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Accelerator Zoo☆21Oct 14, 2025Updated 9 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html☆14Mar 4, 2026Updated 5 months ago
- Simple Job Manager☆60Jul 20, 2017Updated 9 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- Active Learning framework for Natural Language Processing of pathology reports.☆11Dec 8, 2021Updated 4 years ago
- code related to submission of "Accurate diagnosis of lymphoma on whole slide histopathology images using deep learning"☆10May 12, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- VCF-kit: Assorted utilities for the variant call format☆136May 22, 2026Updated 2 months ago
- Sparse-dense matrix-matrix multiplication on GPUs☆14Oct 15, 2018Updated 7 years ago
- ☆14Jan 18, 2023Updated 3 years ago
- ECM Factorization on CUDA-GPUs☆16Sep 29, 2020Updated 5 years ago
- ☆14Mar 18, 2026Updated 4 months ago
- Iterative closest point GPU and CPU implementations (google benchmark)☆19Nov 3, 2020Updated 5 years ago