BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆18Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆24May 15, 2026Updated 3 months ago
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆22Apr 2, 2015Updated 11 years ago
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22May 8, 2024Updated 2 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆19May 23, 2026Updated 3 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆57Mar 31, 2023Updated 3 years ago
- 基于One API的二次开发版本,仅供个人管理渠道使用,请勿用于商业API分发!☆15Mar 7, 2024Updated 2 years ago
- ☆11Aug 27, 2023Updated 3 years ago
- CS-Switch的 Linux CLI & GUI移植版,支持 CLI 命令行和 Tauri 桌面 GUI 两种使用方式☆19Jul 14, 2026Updated last month
- PCR Primer Quality Control☆76Aug 6, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- ☆60Sep 27, 2021Updated 4 years ago
- ☆28Jun 14, 2026Updated 2 months ago
- Retrieving Information of Proteins from Uniprot☆71Mar 6, 2024Updated 2 years ago
- Test of parallel compression acceleration☆17Sep 8, 2024Updated last year
- ☆24Sep 25, 2025Updated 11 months ago
- ScholarMCP - An academic research MCP server with comprehensive literature search, PDF ingestion, and citation management tools. Integrat…☆25Mar 16, 2026Updated 5 months ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 2 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆108Aug 31, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An implementation of the Tool Search Tool in OpenCode as offered by Claude☆25Jan 19, 2026Updated 7 months ago
- Pair-End AssembeR☆36Apr 16, 2014Updated 12 years ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html☆14Mar 4, 2026Updated 5 months ago
- Simple Job Manager☆59Jul 20, 2017Updated 9 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Active Learning framework for Natural Language Processing of pathology reports.☆12Dec 8, 2021Updated 4 years ago
- code related to submission of "Accurate diagnosis of lymphoma on whole slide histopathology images using deep learning"☆10May 12, 2020Updated 6 years ago
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆23May 6, 2026Updated 3 months ago
- VCF-kit: Assorted utilities for the variant call format☆136May 22, 2026Updated 3 months ago
- ☆14Jan 18, 2023Updated 3 years ago
- ☆14Mar 18, 2026Updated 5 months ago
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago