BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆19Dec 16, 2022Updated 3 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Collection of tools and resources for linked-reads☆13Apr 25, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An alternative Vivado custom design example (to fully Vitis) for the User Logic Partition targeting VCK5000☆13Jul 16, 2024Updated last year
- Using Simulated Annealing, Hill Climbing, and Genetic Algorithms to recreate images using shapes 🤖 🧬☆18Feb 26, 2023Updated 3 years ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 7 months ago
- 基于One API的二次开发版本，仅供个人管理渠道使用，请勿用于商业API分发！☆15Mar 7, 2024Updated 2 years ago
- PCR Primer Quality Control☆72Sep 29, 2025Updated 7 months ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated last year
- ☆26Apr 17, 2026Updated 2 weeks ago
- Use tensor core to calculate back-to-back HGEMM (half-precision general matrix multiplication) with MMA PTX instruction.☆13Nov 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- Parallel cuckoo hashing on GPUs with CUDA☆12Sep 27, 2019Updated 6 years ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆23Aug 6, 2024Updated last year
- 高性能计算系统性能评价工具集☆28Jun 6, 2024Updated last year
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆137Mar 25, 2026Updated last month
- Active Learning framework for Natural Language Processing of pathology reports.☆11Dec 8, 2021Updated 4 years ago
- code related to submission of "Accurate diagnosis of lymphoma on whole slide histopathology images using deep learning"☆10May 12, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Offline renderer using CUDA☆13Jun 8, 2020Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs☆33Nov 22, 2025Updated 5 months ago
- A Verification Platform for UDP Protocol Ethernet Module wrapped with AXI and APB bus based on UVM☆31Jun 1, 2022Updated 3 years ago
- ECM Factorization on CUDA-GPUs☆15Sep 29, 2020Updated 5 years ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Simple Job Manager☆61Jul 20, 2017Updated 8 years ago
- Depth of field calculation based on binocular stereo matching using MATLAB☆29Mar 22, 2020Updated 6 years ago
- A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html☆14Mar 4, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- smith-waterman-gotoh alignment algorithm☆17Sep 1, 2017Updated 8 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 2 months ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- A Repository for Polygenic Indexes☆14May 29, 2023Updated 2 years ago
- A CUDA implementation of Arithmetic Coding☆18Jan 21, 2025Updated last year
- A Comprehensive Evaluation of Histopathology Foundation Models for Ovarian Cancer Subtype Classification☆16Jan 31, 2025Updated last year
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year