sflorescu / BWA-MEM_GPULinks
BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries
☆16Updated 2 years ago
Alternatives and similar repositories for BWA-MEM_GPU
Users that are interested in BWA-MEM_GPU are comparing it to the libraries listed below
Sorting:
- BWA-MEM program accelerated with the GASAL2 library☆18Updated 5 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆34Updated last month
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆72Updated 10 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 3 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 8 years ago
- ☆22Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Scripts for analyses in the Griffin manuscript☆11Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆119Updated 11 months ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- ClairS - a deep-learning method for long-read somatic small variant calling☆84Updated this week
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- ☆25Updated 4 years ago
- ☆46Updated 5 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated 7 months ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆21Updated last week
- A complete diploid human genome☆120Updated 4 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago