Alternatives and similar repositories for NaviCell:

Users that are interested in NaviCell are comparing it to the libraries listed below

• BioPAX / paxtoolsr
  The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) mole…
  ☆10Updated 2 years ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆32Updated last month
• jananiravi / compbio-gists
  Computational Biology & Bioinformatics Resources
  ☆14Updated 2 years ago
• epurdom / cobolt
  A Python package for jointly analyzing multimodal single-cell sequencing data
  ☆23Updated 3 months ago
• EBISPOT / GWAS_Catalog-workshop
  Training material for the GWAS Catalog REST API workshop
  ☆13Updated last year
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆17Updated 2 years ago
• intermine / InterMineR
  R package for InterMine
  ☆18Updated 3 years ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• alexisvdb / rnaseq_coexpression
  Code for RNA-seq gene coexpression analysis
  ☆9Updated 3 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆38Updated last year
• cumc / bioworkflows
  In-house computational biology workflows at Columbia Neurology
  ☆34Updated last year
• sysbio-curie / Roma
  Representation of Module Activity
  ☆10Updated 7 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆34Updated 7 months ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆28Updated last year
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆47Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• mulinlab / CAUSALdb-finemapping-pip
  A GWAS fine-mapping pipeline used in CAUSALdb
  ☆25Updated 3 years ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆14Updated 4 months ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 3 years ago
• BUStools / BUS_notebooks_python
  ☆23Updated 5 years ago
• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆9Updated 5 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 3 months ago
• mghandi / gkmSVM
  gkmSVM R package
  ☆17Updated 7 years ago
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 2 years ago
• jasongfleischer / Predicting-age-from-the-transcriptome-of-human-dermal-fibroblasts
  Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables
  ☆23Updated 3 years ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated last year
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated last month
• libscran / scran.chan
  A slimmed down version of scran, based on the C++ library of the same name.
  ☆10Updated 6 months ago