FelixKrueger / ShermanView external linksLinks
A simple Bisulfite FastQ Read Simulator (BiQRS)
☆13Jul 9, 2024Updated last year
Alternatives and similar repositories for Sherman
Users that are interested in Sherman are comparing it to the libraries listed below
Sorting:
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- ☆12Aug 6, 2025Updated 6 months ago
- ☆10Jul 13, 2022Updated 3 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆49Aug 25, 2025Updated 5 months ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- ☆31Mar 5, 2024Updated last year
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 5 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- ☆11Feb 16, 2021Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated 11 months ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jan 4, 2026Updated last month
- Nextflow pipeline for the analysis of metagenomic short reads.☆13Oct 17, 2025Updated 3 months ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 9 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- Make coverage plots from bam files!☆14Mar 19, 2025Updated 10 months ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- ☆11Feb 14, 2023Updated 2 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 3 months ago
- ☆11Oct 31, 2022Updated 3 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Collection of tools and resources for linked-reads☆12Apr 25, 2025Updated 9 months ago
- ☆53Mar 9, 2022Updated 3 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated last year
- ☆13Apr 24, 2023Updated 2 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- 一个中文基因数据库 面向专业人员也面向普通大众☆15Sep 20, 2018Updated 7 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago