douglasgscofield / tinyutils
Collection of tiny utilities for working on data streams
☆12Updated last year
Alternatives and similar repositories for tinyutils:
Users that are interested in tinyutils are comparing it to the libraries listed below
- Useful FILe and stream Operations☆44Updated 9 years ago
- the z in bioinformatics☆33Updated last year
- source code for HpcGridRunner☆17Updated 3 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Small collection of random useful perl scripts☆21Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 8 months ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆30Updated 4 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 14 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 3 years ago
- A FASTQ quality assessment tool☆14Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- quickly filter fastq files by matching sequences to a set of regex patterns☆29Updated this week
- Flexible omics pipeline☆18Updated 6 months ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Updated 7 months ago
- Howto and implementation documentation☆22Updated this week
- A command line program for large scale buffering between piped programs☆13Updated 3 years ago
- A talk on Makesfiles in bioinformatics☆26Updated 11 years ago
- The command-line interface to GGD☆42Updated 2 years ago
- Just a python fasta/q parser based on kseq.h☆12Updated 4 years ago
- Kraken2 Server☆21Updated 11 months ago
- Simple tool to verticalize text delimited files.☆36Updated 8 months ago
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated last week
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆11Updated 11 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- A Better Sequencing Simulator for Metagenomics☆19Updated 4 years ago