douglasgscofield / tinyutilsLinks
Collection of tiny utilities for working on data streams
☆12Updated 2 years ago
Alternatives and similar repositories for tinyutils
Users that are interested in tinyutils are comparing it to the libraries listed below
Sorting:
- the z in bioinformatics☆33Updated last year
- Small collection of random useful perl scripts☆21Updated 11 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- MView extracts and reformats the results of a sequence database search or multiple alignment.☆30Updated 9 months ago
- Search for a set of compatible indexes for your sequencing experiment☆11Updated 5 years ago
- The command-line interface to GGD☆43Updated 2 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- Useful FILe and stream Operations☆45Updated 9 years ago
- Submit slurm sbatch jobs without a script☆69Updated 9 months ago
- R package that makes linux environment modules available from R☆11Updated 2 years ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆53Updated 2 weeks ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- ☆38Updated 4 months ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆11Updated last month
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆16Updated 3 weeks ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- Freelance bioinformaticians directory☆9Updated 2 years ago
- multi-tool QC for minion data☆9Updated 7 years ago
- Simple tool to verticalize text delimited files.☆36Updated last year
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆27Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Flexible omics pipeline☆18Updated last month
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Metagenomic pipeline and other general scripts used in the lab.☆35Updated 5 months ago
- A talk on Makesfiles in bioinformatics☆26Updated 11 years ago
- reference free variant assembly☆33Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago