Alternatives and similar repositories for Socrates

Users that are interested in Socrates are comparing it to the libraries listed below

• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 months ago
• dixonlab / hic_breakfinder
  ☆36Updated 5 years ago
• Xinglab / rMATS-long
  ☆30Updated 8 months ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆16Updated 3 years ago
• scoutzxb / CscoreTool
  ☆21Updated 4 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated last year
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆19Updated 5 years ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆24Updated 4 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 3 weeks ago
• jkimlab / msPIPE
  ☆19Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• RitchieLabIGH / IRFinder
  ☆15Updated 2 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆12Updated 8 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆16Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• zhongmicai / Hic_tools_collection
  ☆12Updated 6 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 7 months ago
• dhkron / PSYCHIC
  Code for finding putative enhancers using Hi-C data
  ☆27Updated 7 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆44Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆37Updated 3 months ago