Alternatives and similar repositories for Socrates

Users that are interested in Socrates are comparing it to the libraries listed below

• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 7 months ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆20Updated 6 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• dozmorovlab / multiHiCcompare
  Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
  ☆10Updated 3 years ago
• hellbelly / BS-Snper
  ☆39Updated 4 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆46Updated last year
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆26Updated 9 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• scoutzxb / CscoreTool
  ☆22Updated 5 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆38Updated 8 months ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆49Updated 3 years ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆35Updated 2 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• deWitLab / peakC
  Peak calling for 4C data
  ☆13Updated 7 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 5 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 8 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆40Updated 4 years ago
• jkimlab / msPIPE
  ☆20Updated 2 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆29Updated 6 years ago
• Aufiero / circRNAprofiler
  ☆11Updated 7 months ago