plantformatics / SocratesLinks
☆23Updated 8 months ago
Alternatives and similar repositories for Socrates
Users that are interested in Socrates are comparing it to the libraries listed below
Sorting:
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- ☆15Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆38Updated 4 years ago
- ☆34Updated this week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆23Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Updated 5 years ago
- ☆13Updated 8 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- ☆37Updated 6 years ago
- 4C-seq processing pipeline☆26Updated 8 months ago
- ☆22Updated 5 years ago
- ☆20Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Genomic Association Tester☆34Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- Micro DNA identification☆24Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆23Updated 11 months ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- Evolutionary Transcriptomics with R☆49Updated this week
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated last year
- ☆19Updated 2 years ago
- ☆22Updated 2 years ago