tzhu-bio / cisDynetLinks
An integrated platform for modeling gene-regulatory dynamics and networks
☆33Updated 3 weeks ago
Alternatives and similar repositories for cisDynet
Users that are interested in cisDynet are comparing it to the libraries listed below
Sorting:
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- An elegant package to visualize gene structures☆82Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆62Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 3 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 7 months ago
- Tutorial Website☆60Updated 4 years ago
- An R package to visualize bigwigs.☆32Updated 3 years ago
- ☆71Updated 3 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆35Updated 4 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆37Updated 3 years ago
- Transcriptomics Visualization R package.☆74Updated 7 months ago
- ☆27Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- ☆50Updated 2 weeks ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆88Updated 4 years ago
- Analysis of Paired-Tag datasets☆43Updated last year
- Visualizing SingleCell data Using GGplot2☆35Updated last year
- SNV calling from single cell sequencing☆116Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- ☆43Updated 4 years ago
- ☆88Updated 3 months ago
- An R package to time somatic mutations☆65Updated 4 years ago
- ☆116Updated 3 months ago