tzhu-bio / cisDynetLinks
An integrated platform for modeling gene-regulatory dynamics and networks
☆32Updated last year
Alternatives and similar repositories for cisDynet
Users that are interested in cisDynet are comparing it to the libraries listed below
Sorting:
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆54Updated last year
- An elegant package to visualize gene structures☆82Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆60Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Tutorial Website☆60Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- SNV calling from single cell sequencing☆112Updated 11 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆35Updated 2 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- ☆47Updated 9 months ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated 6 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆35Updated 4 years ago
- ☆27Updated 5 years ago
- Transcriptomics Visualization R package.☆74Updated 6 months ago