tzhu-bio / cisDynetLinks
An integrated platform for modeling gene-regulatory dynamics and networks
☆32Updated last year
Alternatives and similar repositories for cisDynet
Users that are interested in cisDynet are comparing it to the libraries listed below
Sorting:
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- An elegant package to visualize gene structures☆79Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆35Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- ☆29Updated 10 months ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- ☆86Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ☆86Updated 4 years ago
- ☆47Updated 7 months ago
- Multiscale embedded gene co-expression network analysis☆54Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- ☆70Updated 3 years ago
- ☆45Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆34Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ☆114Updated 5 months ago
- Tutorial Website☆59Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bayesian network plot for the enrichment analysis results☆64Updated 10 months ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Repository for Cibersortx☆61Updated 4 years ago