Alternatives and similar repositories for snipar

Users that are interested in snipar are comparing it to the libraries listed below

• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆50Updated 7 months ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 7 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆49Updated 2 years ago
• weizhou0 / GATE
  ☆23Updated 2 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆26Updated 2 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆74Updated last week
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆46Updated 3 weeks ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆95Updated 8 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆34Updated 4 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆27Updated 2 months ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 2 weeks ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆50Updated 6 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 4 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆58Updated 5 months ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 10 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆84Updated last month
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 7 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated 2 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated last year
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• atgu / hgdp_tgp
  ☆45Updated 3 months ago
• EBISPOT / gwas-summary-statistics-standard
  Documentation on new GWAS Summary Statistics Standard
  ☆23Updated last year
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago