AlexTISYoung / sniparLinks
Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
☆35Updated last week
Alternatives and similar repositories for snipar
Users that are interested in snipar are comparing it to the libraries listed below
Sorting:
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆28Updated 2 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆52Updated 6 months ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- QTL Discovery using Annotations☆26Updated 2 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆49Updated 6 months ago
- causal TWAS (cTWAS)☆45Updated last month
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- Scripts for running a sibling GWAS☆16Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆27Updated last month
- Genotype-based Prediction (GenoPred)☆73Updated this week
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆54Updated 4 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆30Updated last year
- ☆22Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 3 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 9 months ago
- ☆21Updated last week
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- ☆35Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- ☆37Updated 4 years ago
- Cross-population fine-mapping☆37Updated 9 months ago
- Every Gene Ever Annotated in published GWAS☆48Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- Main ricopili repo for public releases☆49Updated 5 months ago
- Regional association plots☆25Updated last year
- software package for integrative genetic association analysis☆35Updated 2 years ago