browning-lab / ukb-phasingLinks
A pipeline for phasing UK Biobank whole genome sequence data
☆18Updated 2 years ago
Alternatives and similar repositories for ukb-phasing
Users that are interested in ukb-phasing are comparing it to the libraries listed below
Sorting:
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 6 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 3 months ago
- ☆42Updated last week
- ☆13Updated 2 years ago
- Cross-population fine-mapping☆36Updated 6 months ago
- ☆18Updated last year
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆26Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆45Updated 3 months ago
- Sequence kernel association test (SKAT)☆50Updated 3 months ago
- Pan-transcriptomic phenotyping☆18Updated 3 weeks ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- Quality control steps for GWAS☆22Updated last year
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆15Updated 2 years ago
- Fine-mapping with infinitesimal effects☆16Updated last week
- ☆25Updated last year
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- A Fine-Mapping pipeline☆19Updated 5 years ago
- Large scale ancestry inference from PCA data☆21Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆29Updated 6 months ago
- Liftover VCF files☆18Updated 8 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆21Updated 7 months ago
- ☆24Updated 6 months ago
- Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.☆33Updated 2 weeks ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 11 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 2 years ago
- ☆22Updated 4 months ago