browning-lab / ukb-phasingLinks
A pipeline for phasing UK Biobank whole genome sequence data
☆19Updated 2 years ago
Alternatives and similar repositories for ukb-phasing
Users that are interested in ukb-phasing are comparing it to the libraries listed below
Sorting:
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆25Updated 11 months ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆18Updated 2 years ago
- Fine-mapping with infinitesimal effects☆18Updated 4 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 2 weeks ago
- ☆24Updated 10 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- A Fine-Mapping pipeline☆21Updated 6 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆17Updated last month
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆17Updated last month
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆27Updated 2 months ago
- Cross-population fine-mapping☆37Updated 10 months ago
- ☆12Updated 2 months ago
- Pan-transcriptomic phenotyping☆18Updated last month
- ☆22Updated 2 months ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Updated 2 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- ☆19Updated last year
- Genotype Representation Graph Library☆37Updated last week
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Non-parametric, asymptotic P-value computation for multivariate linear models☆15Updated 2 years ago
- ☆27Updated 3 months ago
- ☆23Updated 2 months ago
- GWAS genetics Fine-mapping method☆16Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆18Updated 2 months ago
- ☆21Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago