Alternatives and similar repositories for ukb-phasing

Users that are interested in ukb-phasing are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆24Updated 10 months ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 9 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆17Updated 4 months ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• dgarrimar / manta
  Non-parametric, asymptotic P-value computation for multivariate linear models
  ☆15Updated last year
• statgen / topmed_variant_calling
  ☆23Updated 10 months ago
• heatherjzhou / PCAForQTL
  PCA for hidden variable inference in QTL mapping: an R package and tutorial
  ☆18Updated 2 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆33Updated 4 months ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆27Updated last month
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 3 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆49Updated 6 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated last week
• Zilong-Li / vcfppR
  The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
  ☆16Updated 3 weeks ago
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆18Updated last month
• PalamaraLab / quickdraws
  ☆12Updated last month
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆28Updated 2 years ago
• gagneurlab / splicemap
  ☆22Updated last month
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 9 months ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• mortazavilab / cerberus
  ☆19Updated last year
• Nealelab / whole_genome_analysis_pipeline
  ☆20Updated 2 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated last month
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆27Updated 2 years ago
• MyersGroup / ANCHOR
  An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …
  ☆12Updated last year
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago