Alternatives and similar repositories for ukb-phasing:

Users that are interested in ukb-phasing are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated last week
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆19Updated 3 months ago
• zhouhufeng / FAVORannotator
  ☆20Updated last year
• bhattacharya-a-bt / isotwas
  ☆21Updated last month
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆36Updated 2 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆14Updated 11 months ago
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆19Updated 5 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆26Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• PejLab / Pantry
  ☆14Updated this week
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• karltayeb / cafeh
  ☆11Updated 2 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆36Updated 7 months ago
• machiela-lab / PCAmatchR
  A flexible R package for weighted principal component case control matching
  ☆10Updated 10 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆38Updated last year
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 8 months ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated last month
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 6 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated last year
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆17Updated 8 years ago