A pipeline for phasing UK Biobank whole genome sequence data
☆19Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for ukb-phasing
Users that are interested in ukb-phasing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 6 months ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆78Jan 12, 2026Updated 3 months ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- ☆10Jul 8, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Dec 15, 2021Updated 4 years ago
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆251Jul 30, 2024Updated last year
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Sep 2, 2021Updated 4 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Genetics ToolboX R package☆32Feb 10, 2020Updated 6 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆17Jun 12, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆291Mar 28, 2026Updated 2 weeks ago
- fast bgen parser for python☆16Mar 24, 2026Updated 3 weeks ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆22Dec 5, 2018Updated 7 years ago
- ☆50Feb 2, 2025Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 6 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- ☆10Mar 19, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆45Updated this week
- Open Targets python framework for post-GWAS analysis☆54Updated this week
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated 2 weeks ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆12Apr 17, 2024Updated last year
- 🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.☆12Jan 17, 2021Updated 5 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆73Feb 1, 2026Updated 2 months ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 8 months ago
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated last week
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- A collection of commonly used resources for complex trait genetics.☆39Updated this week
- Miscellaneous code related to my blog posts or other purposes☆12Jun 2, 2021Updated 4 years ago
- Scalable genetics toolkit☆275Mar 2, 2026Updated last month
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago