A pipeline for phasing UK Biobank whole genome sequence data
☆19Mar 21, 2023Updated 2 years ago
Alternatives and similar repositories for ukb-phasing
Users that are interested in ukb-phasing are comparing it to the libraries listed below
Sorting:
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 4 months ago
- Genetics ToolboX R package☆32Feb 10, 2020Updated 6 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Jun 12, 2025Updated 8 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- fast bgen parser for python☆16Jan 7, 2026Updated last month
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Jul 19, 2024Updated last year
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆19Jan 9, 2026Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Oct 21, 2025Updated 4 months ago
- A Fine-Mapping pipeline☆22Sep 13, 2019Updated 6 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆22Dec 5, 2018Updated 7 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 6 months ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆29Feb 4, 2026Updated 3 weeks ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆33Sep 29, 2025Updated 5 months ago
- RAPToR (Real Age Prediction from Transcriptome staging on Reference) is a tool to accurately predict individual samples' developmental ag…☆23Mar 29, 2023Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆30Jan 21, 2026Updated last month
- Colocalization analysis of genetic association signals☆55Jun 13, 2025Updated 8 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Sep 2, 2021Updated 4 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- A Python library for reading and manipulating genetic data.☆23Nov 2, 2024Updated last year
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆280Feb 17, 2026Updated 2 weeks ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jan 20, 2026Updated last month
- ☆14Feb 18, 2026Updated last week
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago