dnanexus / UKB_RAPLinks
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
☆220Updated last year
Alternatives and similar repositories for UKB_RAP
Users that are interested in UKB_RAP are comparing it to the libraries listed below
Sorting:
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆139Updated 6 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆155Updated 2 months ago
- ☆100Updated last year
- MetaXcan software and manuscript☆182Updated 5 months ago
- ☆33Updated 11 months ago
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆377Updated 2 years ago
- Repo for the R package coloc☆183Updated 3 weeks ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆18Updated 3 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆74Updated 6 months ago
- UKB RAP Notebooks Genomics contains a collection of examples of how to use UK Biobank Genomics data on the Research Analysis Platform (RA…☆31Updated last year
- Polygenic prediction via continuous shrinkage priors☆196Updated last year
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆93Updated 2 weeks ago
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆95Updated 2 years ago
- ☆50Updated 5 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆266Updated this week
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆200Updated 2 years ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆46Updated last month
- Scripts to analyze TCGA data☆128Updated last year
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 4 years ago
- An R package to manipulate and explore UK Biobank data☆108Updated 2 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆202Updated last year
- R interface to the IEU GWAS database API☆105Updated 2 weeks ago
- Linking GWAS data to analytical tools in R☆150Updated 3 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆189Updated 3 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆91Updated last year
- High-definition likelihood inference of genetic correlations (HDL)☆124Updated 2 weeks ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated last month
- Cross-population polygenic prediction☆96Updated last month
- Causal Mixture Model for GWAS summary statistics☆91Updated last week
- ☆78Updated last month