Alternatives and similar repositories for UKB_RAP:

Users that are interested in UKB_RAP are comparing it to the libraries listed below

• dnanexus / OpenBio
  ☆69Updated last year
• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆80Updated last month
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆145Updated 9 months ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆55Updated last year
• genomics-dev / ukb-pret
  ☆24Updated last month
• chr1swallace / coloc
  Repo for the R package coloc
  ☆162Updated 4 months ago
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆356Updated last year
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆87Updated last year
• NightingaleHealth / ukb-nightingale-biomarker-atlas
  Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".
  ☆13Updated 2 years ago
• jielab / 001
  UKB Phenotype process
  ☆45Updated this week
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆155Updated 4 months ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated 3 months ago
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆33Updated 3 months ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆192Updated this week
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆101Updated 2 years ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆134Updated 2 years ago
• mvab / mendelian-randomization-breast-cancer
  Analysis workflow for MRC-IEU PhD mini-project on childhood BMI effect on breast cancer
  ☆82Updated 11 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆79Updated 3 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆169Updated 7 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆89Updated this week
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆50Updated last year
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆107Updated last week
• as2970 / EA_brain_AD_MR
  ☆40Updated 3 years ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆168Updated 3 months ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆64Updated 4 years ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆75Updated 2 years ago
• alicerosecarter / MediationMR
  Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…
  ☆12Updated 4 years ago
• josefin-werme / LAVA
  ☆60Updated 8 months ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆119Updated last year
• PheWAS / PheWAS
  The PheWAS R package
  ☆138Updated 3 weeks ago