Alternatives and similar repositories for UKB_RAP

Users that are interested in UKB_RAP are comparing it to the libraries listed below

• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆136Updated 5 months ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆179Updated 5 months ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆155Updated last month
• genomics-dev / ukb-pret
  ☆33Updated 10 months ago
• dnanexus / OpenBio
  ☆98Updated last year
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆378Updated 2 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆72Updated 5 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆183Updated this week
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆195Updated last year
• UK-Biobank / UKB-RAP-Notebooks-Genomics
  UKB RAP Notebooks Genomics contains a collection of examples of how to use UK Biobank Genomics data on the Research Analysis Platform (RA…
  ☆30Updated last year
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆264Updated this week
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆200Updated 2 years ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆94Updated 2 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆201Updated last year
• NightingaleHealth / ukb-nightingale-biomarker-atlas
  Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".
  ☆17Updated 2 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆89Updated last month
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆148Updated 3 years ago
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆87Updated last month
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆188Updated 2 months ago
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆253Updated 2 weeks ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆124Updated 5 months ago
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆43Updated last week
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆108Updated 2 years ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆115Updated 3 years ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆127Updated last year
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆38Updated last month
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆103Updated last week
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆56Updated 2 years ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆91Updated last year