Alternatives and similar repositories for FM-pipeline:

Users that are interested in FM-pipeline are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 2 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 2 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆41Updated 2 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆18Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 9 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 3 years ago
• jianyangqt / osca
  ☆19Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 8 months ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆70Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated last week
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 9 months ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated last week
• bhattacharya-a-bt / isotwas
  ☆19Updated last month
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆46Updated this week
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆19Updated 3 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated last year